Gene
| Gene Model ID | pfu_aug1.0_4.1_57870 |
|---|---|
| Locus | scaffold4.1 : 152606 ... 156661 : + |
| To GenomeBrowser | scaffold4.1:152606..156661 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug2.0_363.1_10672 |
Manual annotation
| Study field | Metabolism |
|---|---|
| Gene name | RPE65 superfamily |
| Description | Highest BLAST hit to YP_001424409.1lignostilbene-alpha,beta-dioxygenase [Coxiella burnetii Dugway 5J108-111] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4.1_57870.t1 | 1 | 1 | RPE65 | 81 | 536 | 0.0 | 268.8 | 0.0 | 0.0 | 268.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4.1_57870.t1 | gi|260831846|ref|XP_002610869.1| | hypothetical protein BRAFLDRAFT_94883 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_4.1_57870.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4.1_57870.t1 atgggaagtaaccgttcagatgggaattctcacgatttggccctgcattctcgacttaggtacttctttgaagtttatct tacaacggcaattcgagttattccaagtcgtacggtaacccttcggccttggctggatcgctcttacccaaatgagttaa agaagatcctgacgataatctcaacagcactcacaatagagcacaaaatgaaacatcgacggacccttagcaagctagag attcggaacagtcctgggcgcttcgaagttggaaagagaaacttcacgaatttgtttgacggttttgctaaaggtctgag ctggaagtttcaaggaaatggacaagctttattttctgccaagttccttcggacggactcatacaatgcgtcgatggaga aaaacgatatcgcagaatatctgacaatcggagcagtgcagccgccattttctattgagcagaagatcaaggccatagct aacaatatggataatccggtcgtcaatatttataatttttcctctgacttggtcgttttgaatgatatttggacggtgta taccatcaatgaaaagacgctcgatctagcagagaaaattctggctgaactttccggtgttcatataggatttccttaca taagtcatatgtcaagtgcgcatcctctaccggaaccaggaaccggaaatcatatctcatttattggaagcgtgtcggtt ttgccgggtttgaagcatattctacatgttgtgcgagtgaaatccgcacacgagagggaacttattacaagtatccattt agataagatgccctacatccattcgttttccgtcacaaaaaaatatataatgatgatcggaagcccatattattttgacg tagaccaaatgatagaaaaactgagtgttggctctgcaatgaaatgggaaaaaggggaacctgcaatcatctatgttatt gatctcacaaatggctcaacacagtcatttaaaacagagaccatgttttcgatgcatcatatcaacgctttcgaaataga caacaatcgtttggccatggatgtcgtagcatacagtgaagcgaactccttcagtgctatgtcactggagtacctgagaa acgaaactcaaagaaatgaatttacttcaccttcacaaatacggaggtacacagtcgatttaaggtctggaattgttaac attactacatttcagaatttttctatccagcctcgggcatcacagatcgagcttccgacaataaacgaaaattaccgatt tcgaaagtactgctatgtgtattccgtgatgtataaagccgacaataagagctacagcaacatggcgataatgaagaaag acctatgtcacgtgggtagtaaatcacgtgacaaaatatggtgcgccaaacatcactacttgaatgaggcgtggtttgta ccaaaccctgtcgctacagaggaagacgatggggtgctggtgtttccagtctttgacggcgtaaacaagacttcgtattt ggcaatgctcgatgctaacactatgaaattagtaaacagagcctatatgcctacattagtaccgttcactttccatggaa gatttttttattcgtag |
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Protein
| Protein ID | pfu_aug1.0_4.1_57870.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4.1_57870.t1 MGSNRSDGNSHDLALHSRLRYFFEVYLTTAIRVIPSRTVTLRPWLDRSYPNELKKILTIISTALTIEHKMKHRRTLSKLE IRNSPGRFEVGKRNFTNLFDGFAKGLSWKFQGNGQALFSAKFLRTDSYNASMEKNDIAEYLTIGAVQPPFSIEQKIKAIA NNMDNPVVNIYNFSSDLVVLNDIWTVYTINEKTLDLAEKILAELSGVHIGFPYISHMSSAHPLPEPGTGNHISFIGSVSV LPGLKHILHVVRVKSAHERELITSIHLDKMPYIHSFSVTKKYIMMIGSPYYFDVDQMIEKLSVGSAMKWEKGEPAIIYVI DLTNGSTQSFKTETMFSMHHINAFEIDNNRLAMDVVAYSEANSFSAMSLEYLRNETQRNEFTSPSQIRRYTVDLRSGIVN ITTFQNFSIQPRASQIELPTINENYRFRKYCYVYSVMYKADNKSYSNMAIMKKDLCHVGSKSRDKIWCAKHHYLNEAWFV PNPVATEEDDGVLVFPVFDGVNKTSYLAMLDANTMKLVNRAYMPTLVPFTFHGRFFYS |
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