Gene
| Gene Model ID | pfu_aug1.0_40054.1_55749 |
|---|---|
| Locus | scaffold40054.1 : 1 ... 14807 : + |
| To GenomeBrowser | scaffold40054.1:1..14807 |
| Genes list of scaffold | scaffold40054.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | titin |
| Description | titin partial gene. BLAST top hit to JH000248(Cricetulus griseus) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_40054.1_55749.t1 | 14 | 1 | fn3 | 1 | 75 | 0.0 | 790.8 | 1.7e-17 | 1.6e-14 | 53.7 |
| pfu_aug1.0_40054.1_55749.t1 | 7 | 1 | SusE | 7 | 31 | 7.8e-08 | 32.1 | 0.13 | 120.0 | 2.4 |
| pfu_aug1.0_40054.1_55749.t1 | 9 | 1 | Tissue_fac | 11 | 44 | 5.6e-18 | 64.6 | 0.15 | 140.0 | 2.2 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 2 | fn3 | 149 | 234 | 0.0 | 790.8 | 2.5e-17 | 2.3e-14 | 53.2 |
| pfu_aug1.0_40054.1_55749.t1 | 7 | 2 | SusE | 160 | 185 | 7.8e-08 | 32.1 | 0.41 | 380.0 | 0.8 |
| pfu_aug1.0_40054.1_55749.t1 | 9 | 2 | Tissue_fac | 165 | 228 | 5.6e-18 | 64.6 | 0.0091 | 8.5 | 6.1 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 3 | fn3 | 251 | 334 | 0.0 | 790.8 | 3.7e-18 | 3.4e-15 | 55.9 |
| pfu_aug1.0_40054.1_55749.t1 | 9 | 3 | Tissue_fac | 265 | 302 | 5.6e-18 | 64.6 | 0.33 | 310.0 | 1.1 |
| pfu_aug1.0_40054.1_55749.t1 | 2 | 1 | I-set | 352 | 442 | 4.2e-36 | 122.6 | 3.1e-18 | 2.9e-15 | 55.9 |
| pfu_aug1.0_40054.1_55749.t1 | 2 | 1 | Ig_2 | 361 | 435 | 6.6e-14 | 51.7 | 2.8e-09 | 2.6e-06 | 27.4 |
| pfu_aug1.0_40054.1_55749.t1 | 2 | 1 | V-set | 368 | 439 | 4.4e-08 | 33.0 | 8.6e-06 | 0.008 | 16.0 |
| pfu_aug1.0_40054.1_55749.t1 | 3 | 1 | ig | 369 | 427 | 2.3e-11 | 43.6 | 3.0e-06 | 0.0028 | 17.7 |
| pfu_aug1.0_40054.1_55749.t1 | 2 | 1 | Ig_3 | 371 | 429 | 2.0e-09 | 37.7 | 0.0013 | 1.2 | 9.7 |
| pfu_aug1.0_40054.1_55749.t1 | 2 | 2 | I-set | 456 | 538 | 4.2e-36 | 122.6 | 1.0e-20 | 9.7e-18 | 63.8 |
| pfu_aug1.0_40054.1_55749.t1 | 2 | 2 | Ig_2 | 456 | 537 | 6.6e-14 | 51.7 | 3.5e-06 | 0.0033 | 17.5 |
| pfu_aug1.0_40054.1_55749.t1 | 2 | 2 | Ig_3 | 456 | 525 | 2.0e-09 | 37.7 | 8.5e-07 | 0.00078 | 19.8 |
| pfu_aug1.0_40054.1_55749.t1 | 3 | 2 | ig | 463 | 519 | 2.3e-11 | 43.6 | 2.7e-06 | 0.0025 | 17.8 |
| pfu_aug1.0_40054.1_55749.t1 | 2 | 2 | V-set | 488 | 525 | 4.4e-08 | 33.0 | 4.4e-05 | 0.041 | 13.7 |
| pfu_aug1.0_40054.1_55749.t1 | 9 | 4 | Tissue_fac | 537 | 619 | 5.6e-18 | 64.6 | 0.041 | 38.0 | 4.0 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 4 | fn3 | 544 | 627 | 0.0 | 790.8 | 2.3e-21 | 2.2e-18 | 66.1 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 5 | fn3 | 645 | 723 | 0.0 | 790.8 | 4.8e-20 | 4.5e-17 | 61.9 |
| pfu_aug1.0_40054.1_55749.t1 | 7 | 3 | SusE | 650 | 688 | 7.8e-08 | 32.1 | 0.054 | 50.0 | 3.7 |
| pfu_aug1.0_40054.1_55749.t1 | 9 | 5 | Tissue_fac | 653 | 722 | 5.6e-18 | 64.6 | 0.023 | 21.0 | 4.8 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 6 | fn3 | 727 | 813 | 0.0 | 790.8 | 6.5e-23 | 6.0e-20 | 71.1 |
| pfu_aug1.0_40054.1_55749.t1 | 7 | 4 | SusE | 737 | 763 | 7.8e-08 | 32.1 | 0.015 | 14.0 | 5.5 |
| pfu_aug1.0_40054.1_55749.t1 | 9 | 6 | Tissue_fac | 738 | 806 | 5.6e-18 | 64.6 | 0.0011 | 1.0 | 9.1 |
| pfu_aug1.0_40054.1_55749.t1 | 7 | 5 | SusE | 824 | 864 | 7.8e-08 | 32.1 | 0.094 | 87.0 | 2.9 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 7 | fn3 | 830 | 911 | 0.0 | 790.8 | 3.9e-17 | 3.6e-14 | 52.6 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 8 | fn3 | 931 | 1012 | 0.0 | 790.8 | 8.3e-17 | 7.7e-14 | 51.5 |
| pfu_aug1.0_40054.1_55749.t1 | 3 | 3 | ig | 1016 | 1045 | 2.3e-11 | 43.6 | 0.7 | 650.0 | 0.5 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 9 | fn3 | 1032 | 1114 | 0.0 | 790.8 | 1.0e-20 | 9.7e-18 | 64.0 |
| pfu_aug1.0_40054.1_55749.t1 | 9 | 7 | Tissue_fac | 1048 | 1113 | 5.6e-18 | 64.6 | 0.008 | 7.4 | 6.3 |
| pfu_aug1.0_40054.1_55749.t1 | 7 | 6 | SusE | 1121 | 1167 | 7.8e-08 | 32.1 | 0.022 | 20.0 | 4.9 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 10 | fn3 | 1132 | 1214 | 0.0 | 790.8 | 4.0e-17 | 3.7e-14 | 52.6 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 11 | fn3 | 1235 | 1317 | 0.0 | 790.8 | 3.9e-21 | 3.6e-18 | 65.4 |
| pfu_aug1.0_40054.1_55749.t1 | 9 | 8 | Tissue_fac | 1251 | 1316 | 5.6e-18 | 64.6 | 0.002 | 1.8 | 8.3 |
| pfu_aug1.0_40054.1_55749.t1 | 7 | 7 | SusE | 1324 | 1370 | 7.8e-08 | 32.1 | 0.018 | 17.0 | 5.2 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 12 | fn3 | 1335 | 1417 | 0.0 | 790.8 | 2.5e-17 | 2.3e-14 | 53.2 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 13 | fn3 | 1437 | 1518 | 0.0 | 790.8 | 9.4e-17 | 8.7e-14 | 51.4 |
| pfu_aug1.0_40054.1_55749.t1 | 14 | 14 | fn3 | 1540 | 1620 | 0.0 | 790.8 | 1.7e-20 | 1.6e-17 | 63.3 |
| pfu_aug1.0_40054.1_55749.t1 | 9 | 9 | Tissue_fac | 1554 | 1619 | 5.6e-18 | 64.6 | 0.0089 | 8.3 | 6.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_40054.1_55749.t1 | gi|291240025|ref|XP_002739921.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_40054.1_55749.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_40054.1_55749.t1 aacagcctctgacattacggcagactccgtcaccctgacatggcagcctccatctgacacgggaggaagtgacatcacag cttacctggtggaaaagagggaggcaaacagaagagcatggcaggaagtggctgttgtaccagaactcaccatcattgta cctaaacttctggaaggaaatcagtacttcttcagagtgtcagctaagaatgaagttggcacaagtgatgccgttgaatt gaaggaggcaatcctggcaaagaatccattcggtactgataaagaaatttatgctgtttttcaaatatttgaaataatga caaaggaatctactcattttgaacgtcagaacacaatttgtatttattttcaatttttcgtcattttgatcacacatatg tctgacttttattttcatgatatgtgtcctcttacagatgtaccagatgctccaaacgaaccaatcatttctgatgttag tgcaacttcctgtcagttgtcatggcaaccaccagctaatgatggcggctctcctgtgattggctatcatgtagagagaa tgtccggttacagtccacgctgggtcagggtaactaaggaccttattgacggtacagagctgtctattactgaccttgtg gaaggaaatacttacgagttccgagttttggctgaaaacaaagctggtctaagtaaacctagtcagtctacctcacccat tagggctgttaacccatggaccaaaccagaggcccccgaggctccagagatccccggcaccgacaaatcatcagccgctc taaaatggtcaccacctgaagatgacggtggggcaccaatactgggataccacatcgaacaacgccaaaccagctctcca aaatggacaaaggttaacgatgccatcataccagaaaataccttcagtgttgctggactaaaggagggctcagagtacga gttccgcgtcagtgctgaaaacaaggctggtgtcggtccagtctctaaaccatctaaaccagtcaaaattattgcacctg ttgttggagttgcaccaaaactcttggaaaaacttgatgaccaaacagtaattgcaccaaaggatgccatccttgaatgt gaccttgaccttggagagcccgaggctgagatcaaatggttcaaaggtcagaaggaggtcaagaaaggacctaaatacga gatgagctacgaggatgaagtagccgctctgaccatacacgagacggaaccagctgatgccgatgtttacagatgccagg caaccaatgtcataggtcaagtgcaaacagacggaacattgactattcacacacatcccaaactggagtatgacaacaaa ctgaagagtaatcagattataaaggccggttcttcactaaccatccaagtcaacatcagtggtataccatcaccaaccgt caaatggttgttggacaaagaaccgattgacaaatcctcccatgttagtattgatatcaacaacgacttcaccactctga ccataaaaaatgccactctggaggacggtggagtttataacgtcactgctgaaaatgtggtgggctcagcagaagccgaa tttaccatacaggtcaaagataagcctggaaaacccaaaaacctgaaagttcttgaagttgccaaggattctgtgtcgtt gtcatgggaaccgccaatggagacaggaaactctgacattgatggttacatcatcgagaaacgtgacgccaagcgtaaca cctggtccaccgtagctaacgtagatggcagcactaacacatttgctgtccagaaattgctagagggaaatgagtactat ttccgtgtagcggctaaaaatgagatcggtcttggtgagccagcagaactggacgaaagcaccatggccaaatgtccctt tgatgtacctggacagccaagaaatctggcagcaactgaaatcaccaaatctcaagtgaccttgacctgggatataccag aacaagatggtggatcaccaatcactggttacgtcatagagaggagtaaggcaggcagtaaccgatggttgaaggctcac aagaaaccagtaactgatacggtatacacggtaacagagctggtagagaatgcggaatatgacttcagagtagcagctga gaatgaagctgacaaaccagatgccccaggtaaacctgaaatctctgacgtcactaagacatctgtgaccttgacctgga caccaccagaaaaagatggcggagaccaaatattcaactatgtcatcgagtacaaaccaacacatgccttgaagtggcta cctgctaatcgtaacatccaggttccggagacgaccttcaccttgaaggacttgacggagggtatggagtacgagttccg agtgtcagcggagaaccgagccggtgtcggaccagcatcaataccgtctggtgttgttgtcgttagggaaccagtcaaca ctcctaaatcacctagacaattcagtgtatctaaagaaggacctgactttgtgaccttggcctggaaacctccatcagaa gatggtgggtcaaaggtcaaaggttataccatcaaacaacgtgaaggtccagatggagactggaaaactgtggccaatat aaagccgtatgatggatcgtacaaagtacagaatctgaaagaaggagtagaatattacttctctattgctgcagaaaacg aggctggagaaggtgtcagctgtgaactagaggctcctgttgtaccaaagaaacctccaggaccaccatctaaaccaaaa ggaccccttgaaatctctgatgttgacaaatcatctgctaagttgtcatggcaaccaccatcacatgatggaggatcacc aatcaaaggctaccttatagagaagcgggaaggccgtaaaccatggacaaaagtagattctattggtccagagactaact acacagtgaagggacttacagagggtgttgatcatctgttcagagtatctgccattaacaaacttggtaacagtgaggct ctggaaagaaaggactccattaaacctcagagtctctttgacaaaccctatgcaccaacaggaccccttcagatcagtaa tgtcacaaagaattctgctgatctagaatggaaaccaccaacttcagacggtggctcccctatcaccaaatacatagttg aagccaaacccacatctcggtcctcatggaccaaagtaggatctgtgggaccagacagcaccaaactgacagccaaggac cttaaagaaggactggagtataacttcagagtgatagctgtcaatgaggagggagagagcaaacctctagaatctgtaga cacagccaaaccaaagaagaaaattgatgcaccttcatcaccaagacaattcagcatatccaaggaaggacctgactttg tgaccttggcctggaaacctccatcagaagatggtgggtcaaaggtcaaaggttataccatcaaacaacgtgaaggtcca gatggagactggaaaactgtggccaatataaagccgtatgatggatcatacaaagtacataacctgaaagaaggagtaga atattacttctctattgctgcagaaaacgaggcaggagaaggtgtcagctgtgaactagaggctcctgttgtaccaaaga aacctccagacaaaccctatgcaccaacaggaccccttgagatcagtaacgtcactgacaattctgctgatctagaatgg aaaccaccaaaatctgacggtggctcccctatcaccaagtacctagtggaagccaaacccacatctcggtcctcatggac caaagtaggatctgtggaaccggacagcaccaaactgacggccaaggaccttaaagaaggactggagtataacttcagag tgacagctgtcaatgaggagggagagagcaaacctctagaatctgtagatactgccaaaccaaagaagaaaattgatgca ccttcgtcaccaagacaattcagcgtttccaaggaaggacctgactttgtgaccttggcctggaaacctccatcagaaga tggtgggtcaaaggtcaaaggttataccatcaaacaacgtgaaggtccagatggagactggaatactgtggccaatataa agccgtatgatggatcatacaaagtacagaatctgaaagaaggagtagaatattacttctctattgctgcagaaaacgag gctggagaaggtgtcagctgtgaactagaggctcctgttgtaccaaagaaacctccaggaccaccatctaaaccaaaagg acccctcgaaatctctgatgttgacaaatcttctgctatgttgtcatggcaaccaccatcacatgatggaggagcaccaa tcaaaggctaccttatagagaagagggaaggccgtaaaccatggacaaaagtagattctattggtccagagactaactac actgtgaagggacttacagagggtgttgatcatctgttcagagtatctgccattaacaaacttggtaacagtgaggctct ggaaagaaaggactccatcaaacctcagagtctgtttgacaaaccctttgcaccaacaggacccctcgagatcagtaatg tcactgagaattctgctgatctagaatggaaaccaccaaaatctgacggtggctcccctatcaccaaatacctagtggaa gccaaacccacatctcggtcctcatggaccaaagtaggatctgtgggaccagacagcaccaaactgacagccaaggacct taaagaaggactggagtataacttcagagtgacagctatcaatgaggagggagagagcaaacctctagaatctgtagaca ccgccaaaccacagaagaaaattggtgagctcttttatactttatggtga |
|
Protein
| Protein ID | pfu_aug1.0_40054.1_55749.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_40054.1_55749.t1 TASDITADSVTLTWQPPSDTGGSDITAYLVEKREANRRAWQEVAVVPELTIIVPKLLEGNQYFFRVSAKNEVGTSDAVEL KEAILAKNPFGTDKEIYAVFQIFEIMTKESTHFERQNTICIYFQFFVILITHMSDFYFHDMCPLTDVPDAPNEPIISDVS ATSCQLSWQPPANDGGSPVIGYHVERMSGYSPRWVRVTKDLIDGTELSITDLVEGNTYEFRVLAENKAGLSKPSQSTSPI RAVNPWTKPEAPEAPEIPGTDKSSAALKWSPPEDDGGAPILGYHIEQRQTSSPKWTKVNDAIIPENTFSVAGLKEGSEYE FRVSAENKAGVGPVSKPSKPVKIIAPVVGVAPKLLEKLDDQTVIAPKDAILECDLDLGEPEAEIKWFKGQKEVKKGPKYE MSYEDEVAALTIHETEPADADVYRCQATNVIGQVQTDGTLTIHTHPKLEYDNKLKSNQIIKAGSSLTIQVNISGIPSPTV KWLLDKEPIDKSSHVSIDINNDFTTLTIKNATLEDGGVYNVTAENVVGSAEAEFTIQVKDKPGKPKNLKVLEVAKDSVSL SWEPPMETGNSDIDGYIIEKRDAKRNTWSTVANVDGSTNTFAVQKLLEGNEYYFRVAAKNEIGLGEPAELDESTMAKCPF DVPGQPRNLAATEITKSQVTLTWDIPEQDGGSPITGYVIERSKAGSNRWLKAHKKPVTDTVYTVTELVENAEYDFRVAAE NEADKPDAPGKPEISDVTKTSVTLTWTPPEKDGGDQIFNYVIEYKPTHALKWLPANRNIQVPETTFTLKDLTEGMEYEFR VSAENRAGVGPASIPSGVVVVREPVNTPKSPRQFSVSKEGPDFVTLAWKPPSEDGGSKVKGYTIKQREGPDGDWKTVANI KPYDGSYKVQNLKEGVEYYFSIAAENEAGEGVSCELEAPVVPKKPPGPPSKPKGPLEISDVDKSSAKLSWQPPSHDGGSP IKGYLIEKREGRKPWTKVDSIGPETNYTVKGLTEGVDHLFRVSAINKLGNSEALERKDSIKPQSLFDKPYAPTGPLQISN VTKNSADLEWKPPTSDGGSPITKYIVEAKPTSRSSWTKVGSVGPDSTKLTAKDLKEGLEYNFRVIAVNEEGESKPLESVD TAKPKKKIDAPSSPRQFSISKEGPDFVTLAWKPPSEDGGSKVKGYTIKQREGPDGDWKTVANIKPYDGSYKVHNLKEGVE YYFSIAAENEAGEGVSCELEAPVVPKKPPDKPYAPTGPLEISNVTDNSADLEWKPPKSDGGSPITKYLVEAKPTSRSSWT KVGSVEPDSTKLTAKDLKEGLEYNFRVTAVNEEGESKPLESVDTAKPKKKIDAPSSPRQFSVSKEGPDFVTLAWKPPSED GGSKVKGYTIKQREGPDGDWNTVANIKPYDGSYKVQNLKEGVEYYFSIAAENEAGEGVSCELEAPVVPKKPPGPPSKPKG PLEISDVDKSSAMLSWQPPSHDGGAPIKGYLIEKREGRKPWTKVDSIGPETNYTVKGLTEGVDHLFRVSAINKLGNSEAL ERKDSIKPQSLFDKPFAPTGPLEISNVTENSADLEWKPPKSDGGSPITKYLVEAKPTSRSSWTKVGSVGPDSTKLTAKDL KEGLEYNFRVTAINEEGESKPLESVDTAKPQKKIGELFYTLW |
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