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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_40055.1_70346
Locus scaffold40055.1 : 1 ... 5459 : -
To GenomeBrowser scaffold40055.1:1..5459
Genes list of scaffold scaffold40055.1
Synonym pfu_aug2.0_188.1_27011

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_40055.1_70346.t1 2 1 PDZ 2 49 6.9e-11 42.1 1.5e-09 5.7e-06 26.4
pfu_aug1.0_40055.1_70346.t1 2 1 PDZ_2 6 57 6.8e-06 25.8 1.1e-05 0.041 13.7
pfu_aug1.0_40055.1_70346.t1 2 2 PDZ_2 102 118 6.8e-06 25.8 0.00012 0.46 10.3
pfu_aug1.0_40055.1_70346.t1 2 2 PDZ 104 125 6.9e-11 42.1 1.4e-05 0.053 13.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_40055.1_70346.t1 gi|260786588|ref|XP_002588339.1| hypothetical protein BRAFLDRAFT_281382 [Branchiostoma floridae] 8.0e-17

Transcript
Transcript IDpfu_aug1.0_40055.1_70346.t1
Definition-
>pfu_aug1.0_40055.1_70346.t1
gtccctgaaagtttagcagctattgacggcagattacgtccagatgacagggtcctggagattaatggtatagacgtgtc
ttatggcagtcaagatcaagctgctcatattatacagactagtattgacagagtacaatttgtgatatcacggcggagtc
gtccccagactcctgaccttatacgatccaccactgataatggtgtacccccatccaaccaccaaactaagtcagaagtc
ttctcatcctgtcagaaatgtaacgataggctagtcacagtaaccaaggaaaaaaattttacttcttttcagaaaggtga
tatcctgctttccataaatgggaacagtttaattggtttgactcacaacgaagct

Protein
Protein IDpfu_aug1.0_40055.1_70346.t1
Definition-
>pfu_aug1.0_40055.1_70346.t1
VPESLAAIDGRLRPDDRVLEINGIDVSYGSQDQAAHIIQTSIDRVQFVISRRSRPQTPDLIRSTTDNGVPPSNHQTKSEV
FSSCQKCNDRLVTVTKEKNFTSFQKGDILLSINGNSLIGLTHNEA

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