Gene
Gene Model ID | pfu_aug1.0_40055.1_70346 |
---|---|
Locus | scaffold40055.1 : 1 ... 5459 : - |
To GenomeBrowser | scaffold40055.1:1..5459 |
Genes list of scaffold | scaffold40055.1 |
Synonym | pfu_aug2.0_188.1_27011 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_40055.1_70346.t1 | 2 | 1 | PDZ | 2 | 49 | 6.9e-11 | 42.1 | 1.5e-09 | 5.7e-06 | 26.4 |
pfu_aug1.0_40055.1_70346.t1 | 2 | 1 | PDZ_2 | 6 | 57 | 6.8e-06 | 25.8 | 1.1e-05 | 0.041 | 13.7 |
pfu_aug1.0_40055.1_70346.t1 | 2 | 2 | PDZ_2 | 102 | 118 | 6.8e-06 | 25.8 | 0.00012 | 0.46 | 10.3 |
pfu_aug1.0_40055.1_70346.t1 | 2 | 2 | PDZ | 104 | 125 | 6.9e-11 | 42.1 | 1.4e-05 | 0.053 | 13.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_40055.1_70346.t1 | gi|260786588|ref|XP_002588339.1| | hypothetical protein BRAFLDRAFT_281382 [Branchiostoma floridae] | 8.0e-17 |
Transcript
Transcript ID | pfu_aug1.0_40055.1_70346.t1 |
---|---|
Definition | - |
>pfu_aug1.0_40055.1_70346.t1 gtccctgaaagtttagcagctattgacggcagattacgtccagatgacagggtcctggagattaatggtatagacgtgtc ttatggcagtcaagatcaagctgctcatattatacagactagtattgacagagtacaatttgtgatatcacggcggagtc gtccccagactcctgaccttatacgatccaccactgataatggtgtacccccatccaaccaccaaactaagtcagaagtc ttctcatcctgtcagaaatgtaacgataggctagtcacagtaaccaaggaaaaaaattttacttcttttcagaaaggtga tatcctgctttccataaatgggaacagtttaattggtttgactcacaacgaagct |
Protein
Protein ID | pfu_aug1.0_40055.1_70346.t1 |
---|---|
Definition | - |
>pfu_aug1.0_40055.1_70346.t1 VPESLAAIDGRLRPDDRVLEINGIDVSYGSQDQAAHIIQTSIDRVQFVISRRSRPQTPDLIRSTTDNGVPPSNHQTKSEV FSSCQKCNDRLVTVTKEKNFTSFQKGDILLSINGNSLIGLTHNEA |