Gene
| Gene Model ID | pfu_aug1.0_40220.1_41162 |
|---|---|
| Locus | scaffold40220.1 : 13 ... 10273 : + |
| To GenomeBrowser | scaffold40220.1:13..10273 |
| Genes list of scaffold | scaffold40220.1 |
| Synonym | pfu_aug2.0_1314.1_14959 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_40220.1_41162.t1 | 2 | 1 | MutS_V | 52 | 92 | 2.1e-09 | 37.1 | 9.0e-09 | 6.7e-05 | 22.4 |
| pfu_aug1.0_40220.1_41162.t1 | 2 | 2 | MutS_V | 93 | 128 | 2.1e-09 | 37.1 | 4.3e-06 | 0.032 | 13.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_40220.1_41162.t1 | gi|260830061|ref|XP_002609980.1| | hypothetical protein BRAFLDRAFT_124403 [Branchiostoma floridae] | 1.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_40220.1_41162.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_40220.1_41162.t1 atgagggaacagttagttattgactgtaacgaagcttggaatcagttcacaaagtcattcagtgataattatgtgaagta caagaaggctgtgaatcatcttgctacattagactgtttactttctttggccacagttgccaggagtcaaggctattgca ggccggcatttgtgacagatagagtttgtatacagatagagaaaggtcagcatcctgtcattacacagctgttaggtgaa caggaacaatttgtacctaatgatacaaacatagacctgcgatgtcccaccttgtttgtgactcactatcccatgttagc agagtttgagaagcttcatccagcagtagctgtcaactatcatatgtcattcttcctggaggatgaagatggtgagttgg atctgtctttgtga |
|
Protein
| Protein ID | pfu_aug1.0_40220.1_41162.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_40220.1_41162.t1 MREQLVIDCNEAWNQFTKSFSDNYVKYKKAVNHLATLDCLLSLATVARSQGYCRPAFVTDRVCIQIEKGQHPVITQLLGE QEQFVPNDTNIDLRCPTLFVTHYPMLAEFEKLHPAVAVNYHMSFFLEDEDGELDLSL |
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