Gene
| Gene Model ID | pfu_aug1.0_4024.1_23471 |
|---|---|
| Locus | scaffold4024.1 : 42916 ... 70325 : + |
| To GenomeBrowser | scaffold4024.1:42916..70325 |
| Genes list of scaffold | scaffold4024.1 |
| Synonym | pfu_aug2.0_82.1_06894 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4024.1_23471.t1 | 2 | 1 | RRM_6 | 121 | 186 | 3.7e-09 | 36.4 | 3.3e-10 | 1.6e-06 | 27.9 |
| pfu_aug1.0_4024.1_23471.t1 | 2 | 1 | RRM_1 | 124 | 171 | 1.3e-10 | 40.7 | 2.5e-09 | 1.2e-05 | 24.8 |
| pfu_aug1.0_4024.1_23471.t1 | 3 | 1 | RRM_5 | 137 | 191 | 2.6e-20 | 72.0 | 9.2e-10 | 4.5e-06 | 26.3 |
| pfu_aug1.0_4024.1_23471.t1 | 3 | 2 | RRM_5 | 184 | 196 | 2.6e-20 | 72.0 | 0.12 | 580.0 | 0.4 |
| pfu_aug1.0_4024.1_23471.t1 | 3 | 3 | RRM_5 | 205 | 257 | 2.6e-20 | 72.0 | 4.7e-15 | 2.3e-11 | 43.3 |
| pfu_aug1.0_4024.1_23471.t1 | 2 | 2 | RRM_1 | 205 | 247 | 1.3e-10 | 40.7 | 1.2e-05 | 0.06 | 12.9 |
| pfu_aug1.0_4024.1_23471.t1 | 2 | 2 | RRM_6 | 205 | 245 | 3.7e-09 | 36.4 | 0.0023 | 11.0 | 6.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4024.1_23471.t1 | gi|340726548|ref|XP_003401618.1| | PREDICTED: polypyrimidine tract-binding protein 2 isoform X2 [Bombus terrestris] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4024.1_23471.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4024.1_23471.t1 atgtatgtttgctattacacgtatcctggagcctctcatcaccagtcgccgctagctaccgccgctccccagcccctcgc cgctgcccctcagcctgctgccgtacccgccagcgagcctctcctcgtacccgttaccgccacacaagcactaccccagg cgctgacccaggctatccctcccgcctctctaacatccattccaatcactgtctgtagaaagagaccatcggacgaactc atgtctaactcgccaatggtgaccaatgggactggccttagtccacagcacgggtccaactccgacaatgatgctaaaaa ggtcaagctggacaaccaggtaaatggtccctccagggtggtgcacctccggagtctacccccagactgcacggaagccg acgtggtacaactgggtatgccctacggcaaaatgacaaacgttttactgctcaaacagaaaaatcaggctttcctggag ttccaagatgaacaatctgcttgtacaatggtcagctttcatcaacaaacgccagcctccattagggcacggcatgtcta tgtacagttttcaaaccacaaagaactcaaaacggaccaagcacattctctacagattttctccaagtttggaaaagtac tgaagatgatcattttcacaaaaaatactcttattcagatgtctgatccagtagcagcaaatgcagctaaattgtcccta gatggtcagaatatttacaatgggtgctgtacactaagaatagactattccaagctgaacaatttgaacgtcaaatataa taacgacaagagtcgagactttacaaatccaaacctcccgagcggtgatccaagcatagaccaaagtatgccattcggag gtaagagataa |
|
Protein
| Protein ID | pfu_aug1.0_4024.1_23471.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4024.1_23471.t1 MYVCYYTYPGASHHQSPLATAAPQPLAAAPQPAAVPASEPLLVPVTATQALPQALTQAIPPASLTSIPITVCRKRPSDEL MSNSPMVTNGTGLSPQHGSNSDNDAKKVKLDNQVNGPSRVVHLRSLPPDCTEADVVQLGMPYGKMTNVLLLKQKNQAFLE FQDEQSACTMVSFHQQTPASIRARHVYVQFSNHKELKTDQAHSLQIFSKFGKVLKMIIFTKNTLIQMSDPVAANAAKLSL DGQNIYNGCCTLRIDYSKLNNLNVKYNNDKSRDFTNPNLPSGDPSIDQSMPFGGKR |
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