Gene
| Gene Model ID | pfu_aug1.0_403.1_36540 |
|---|---|
| Locus | scaffold403.1 : 43349 ... 58455 : - |
| To GenomeBrowser | scaffold403.1:43349..58455 |
| Genes list of scaffold | scaffold403.1 |
| Synonym | pfu_aug2.0_824.1_14582 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_403.1_36540.t1 | 2 | 1 | CS | 193 | 207 | 3.4e-09 | 37.1 | 0.92 | 14000.0 | -3.3 |
| pfu_aug1.0_403.1_36540.t1 | 2 | 2 | CS | 269 | 319 | 3.4e-09 | 37.1 | 7.3e-13 | 1.1e-08 | 35.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_403.1_36540.t1 | gi|72088711|ref|XP_795347.1| | PREDICTED: nudC domain-containing protein 1 isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| trochophore | 2 |
| >Adult tissues | |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_403.1_36540.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_403.1_36540.t1 atggaggcacgatcatcgttgccgattcggcgtgaattgattgatgcaaagtttgaaggctacaaattgtctctggattg tttaccaacttaccaatgtagtttagaatctgtgttagatgtaaccagtttgagtgaggatcagtactccttccatcatg ctaaactacttggcgttcataatcacctgatacaggatccatggtgtaacaaacatgtatactttgtatcatccgattgg tttattgtcaaagctatgactacaatgtcatctgtgcagattgatggcagggtggtacagattccagattcggccataca aagagaggtgattggtcgtcatgaggtcacgatggtgtttgtatccccagatttagcagttgtatcagacggagccggca aacttcatgtttacttcacaggggatagacaaagctcagcagaaaaatggaaggtactgttttcattggatcctgttgat gggaaagctccattctcattggttgattccttgatgacatcagacaacggtactacctacattgattgtctttgtgcata tgtgattgagtcaaatcaggaccaaaaagaaaaattcaagtccaatcacctgtctgttatagattgggtaaccattgtct ccagtgatcagaagtcctggaaacaggagagaagtagacagttgctagggagacgaccatttgattatgttgccatggac tccaatcagagtgttgtcatagcagcaccttcagcattcaagtttcactttgactcattgaaaccggtcttggaggagga agttgcagatatctatctcgcactgacatctgaccatatagactttggtataaagaatggtaaagctttactgaaggggc acttacatggaccagtagatgtagagggcagcacatggactatacaggaacagagagtggagttgaccttgaccaagctt aaccaggaggtgtggcctgtagttgttgtaggggaccacagaggggagatgactctggatcaagcacagattgctgaaat tcataatagattagcaggtctcacgtcagaacagttgaacccagctcctgaccctgaggttaacaagccgtataatgccc aggaactagaggactgtgatgctttccctgatgatagctccatggtaaccagaatagatggaaactcgcacaaggtcaca caccaaaccaaccttggaagtcaccagttcctgtttacgactcgtgtatcccatgatgcaccaagtgtgttttgtttacg tcatgatgtagatggcttagtttggcaaccagcaaaaactgtcaaagagcatgattcaccatggcaacatgtggcaacct tcaatgcttttggttatgtgcaggcatcaaaacaacagaggaaattctgtgcctgtagttcggacttttcatacgtagct atttgtgatgcagtaagacactgttatatttaccgccaaccaacagctgttttatctcctgtcagaaacagaaagactgg acaacaaataaatacggttgccaagcaacaagttgtttccttagaatcagcagacagtgttgtgggtctccatgcaacac atacaaaactctttatactgacaacttctaaattatatgctgttcaggtcaatcctgaaactgtttaa |
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Protein
| Protein ID | pfu_aug1.0_403.1_36540.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_403.1_36540.t1 MEARSSLPIRRELIDAKFEGYKLSLDCLPTYQCSLESVLDVTSLSEDQYSFHHAKLLGVHNHLIQDPWCNKHVYFVSSDW FIVKAMTTMSSVQIDGRVVQIPDSAIQREVIGRHEVTMVFVSPDLAVVSDGAGKLHVYFTGDRQSSAEKWKVLFSLDPVD GKAPFSLVDSLMTSDNGTTYIDCLCAYVIESNQDQKEKFKSNHLSVIDWVTIVSSDQKSWKQERSRQLLGRRPFDYVAMD SNQSVVIAAPSAFKFHFDSLKPVLEEEVADIYLALTSDHIDFGIKNGKALLKGHLHGPVDVEGSTWTIQEQRVELTLTKL NQEVWPVVVVGDHRGEMTLDQAQIAEIHNRLAGLTSEQLNPAPDPEVNKPYNAQELEDCDAFPDDSSMVTRIDGNSHKVT HQTNLGSHQFLFTTRVSHDAPSVFCLRHDVDGLVWQPAKTVKEHDSPWQHVATFNAFGYVQASKQQRKFCACSSDFSYVA ICDAVRHCYIYRQPTAVLSPVRNRKTGQQINTVAKQQVVSLESADSVVGLHATHTKLFILTTSKLYAVQVNPETV |
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