Gene
| Gene Model ID | pfu_aug1.0_4032.1_44843 |
|---|---|
| Locus | scaffold4032.1 : 22280 ... 28035 : - |
| To GenomeBrowser | scaffold4032.1:22280..28035 |
| Genes list of scaffold | scaffold4032.1 |
| Synonym | pfu_aug2.0_1574.1_15123 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-orphan-HLH-a |
| Description | Best hit to NP_835455 pancreas transcription factor 1 subunit alpha [Homo sapiens] with 9e-12 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4032.1_44843.t1 | 2 | 1 | HLH | 31 | 46 | 6.7e-14 | 51.3 | 0.016 | 240.0 | 1.5 |
| pfu_aug1.0_4032.1_44843.t1 | 2 | 2 | HLH | 61 | 114 | 6.7e-14 | 51.3 | 4.5e-18 | 6.7e-14 | 51.3 |
Transcript
| Transcript ID | pfu_aug1.0_4032.1_44843.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4032.1_44843.t1 atggaaaaggtagatattgagacaaaaattgatgataaggaactatcagatgtagaacctgttgatttgacttctgaatc aaatgaaattaggaaaaagattaatgatagaaagaagaaaagagtcaagaacatgaagaaattcgaaagtttgaatataa gtgaagaagaaatggaagaaaggagacggtcagcaaatgatctggaaaggaggaggatgaaaaaaatgtccgaagcccta gacgatctcagaaagtgtattcctcaacatcttcatctgtatcatcgtagaatgtctaaaattcggactttgcgacttgc gacgtcgtacatacgggcacttagtgacatgttacagaaggacattatgagagagatggtacagaatgcatatagaaata ttcagtacaatttgatccagtcaccagtggtatatcccggaataacggttaatgtggcgccttcccccaccaccggaact cctaacttaggacattcctaccacactccccctaggagacaacttaatttctctcagggacagggatattccccctctac acagtacctcccgacaccagatcagaccctaggaccacacccagcataccaaacacctatcccacccagtatagcgttct accgtacctccgctcagagacgctggcacacacctagccacaccctttcctccccgcctgaggaggatgagtaccccagt aagccttacgaggatccgtcagtacagggagatgggagggtaccagatcaggagttctcggggaaaagttcctgtcgata tgggactatgtatgtagaaggggtctacccactcccggacagtaaacaaagtgatggataa |
|
Protein
| Protein ID | pfu_aug1.0_4032.1_44843.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4032.1_44843.t1 MEKVDIETKIDDKELSDVEPVDLTSESNEIRKKINDRKKKRVKNMKKFESLNISEEEMEERRRSANDLERRRMKKMSEAL DDLRKCIPQHLHLYHRRMSKIRTLRLATSYIRALSDMLQKDIMREMVQNAYRNIQYNLIQSPVVYPGITVNVAPSPTTGT PNLGHSYHTPPRRQLNFSQGQGYSPSTQYLPTPDQTLGPHPAYQTPIPPSIAFYRTSAQRRWHTPSHTLSSPPEEDEYPS KPYEDPSVQGDGRVPDQEFSGKSSCRYGTMYVEGVYPLPDSKQSDG |
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