Gene
| Gene Model ID | pfu_aug1.0_406.1_65408 |
|---|---|
| Locus | scaffold406.1 : 31626 ... 53649 : + |
| To GenomeBrowser | scaffold406.1:31626..53649 |
| Genes list of scaffold | scaffold406.1 |
| Synonym | pfu_aug2.0_75.1_16866 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Pax-2/5/8 |
| Description | BLAST best hits to NCBI AJ505023.1. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_406.1_65408.t1 | 1 | 1 | PAX | 37 | 161 | 0.0 | 236.7 | 0.0 | 0.0 | 236.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_406.1_65408.t1 | gi|27528344|emb|CAD43608.1| | paired box protein [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| trochophore | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_406.1_65408.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_406.1_65408.t1 atgtgctccaacatgccgatgtattatatgccttccatggaacattctttcttttcccatcataaatataatatgtttgg aaacatggaaatgtcatgtaattttcaaggccatggtggtgtaaatcagttgggcggggtgtttgtgaacgggcgccccc tgccggacgtggtccgtcagaggattgtggagttggcccatcagggggtacgcccctgtgacatctcacggcaattacgg gtatcacatggctgtgttagtaaaattttaggaagatactacgaaacggggtcaatcaaacctggagttatagggggttc aaaaccgaaagtagccacacccaaagttgtagacgccataacaaggtacaagcatgagaacccaactatgtttgcctggg agatacgggacagattattggcggagggcgtgtgcacgtcagaaaacgtccccagtgtcagctctatcaacagaattgtt cgaaacaaagcggcagagaatgccaaacattccccagggcagacgagtccctccctgtcaaacgacgcaggcagtccccc tttgtcacacacccatcaaccctcacctaatggtgacgggatcccaagggcatcagccccatcctactctataactggga tcctaggaatctcacagggacaaaatccccagggtatggtggatgctaactcaaataaacgaaagagggaaaaccagcct gtaaataatggacacgaacccgagattaaaacagaaccaaatacaaaccatatagatatgtggtacgatcctcagcgtca gaaaattcctagacaagatggcgtgccccaggaccacgccctttcacaaacaatattgataaacaatgctccgtatgcgg gggtagtgccatcgttagcccctcaatataacgctcagtttgtcacaacaacgaccagtgttacgggggacgttcataaa ggtggtgcccctgttgtagagtacaccatgccttcatctgccataggaaccttaccaaatacagagtctcatatccccac cacaaactacagttcgtccataggtgatagcaccagttacacgggttccctcccctcgtatcaaagccaagcggtggtgg cgccagtggtaccacctttagtaatatccagtggcaactatagtccagccaatccaccctctggcggggagtactataat gcggtaccttacacacagtatcaagcagcacagtatgatccctcctggggtctaaggtactcggcccctgctgcggcagg acttctaaacacgccatactattatcagacagccgtctcagggagaaatgagcccactactacaaatgcggcccctgtcc ccgctacgcaacagccacaacaacctccccaacagcagcaacaacaggccccaccccaggcggcaagtccccctaaaacg tag |
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Protein
| Protein ID | pfu_aug1.0_406.1_65408.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_406.1_65408.t1 MCSNMPMYYMPSMEHSFFSHHKYNMFGNMEMSCNFQGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDAITRYKHENPTMFAWEIRDRLLAEGVCTSENVPSVSSINRIV RNKAAENAKHSPGQTSPSLSNDAGSPPLSHTHQPSPNGDGIPRASAPSYSITGILGISQGQNPQGMVDANSNKRKRENQP VNNGHEPEIKTEPNTNHIDMWYDPQRQKIPRQDGVPQDHALSQTILINNAPYAGVVPSLAPQYNAQFVTTTTSVTGDVHK GGAPVVEYTMPSSAIGTLPNTESHIPTTNYSSSIGDSTSYTGSLPSYQSQAVVAPVVPPLVISSGNYSPANPPSGGEYYN AVPYTQYQAAQYDPSWGLRYSAPAAAGLLNTPYYYQTAVSGRNEPTTTNAAPVPATQQPQQPPQQQQQQAPPQAASPPKT |
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