Gene
| Gene Model ID | pfu_aug1.0_408.1_50846 |
|---|---|
| Locus | scaffold408.1 : 43605 ... 62345 : - |
| To GenomeBrowser | scaffold408.1:43605..62345 |
| Genes list of scaffold | scaffold408.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_408.1_50846.t1 | 6 | 1 | Reo_sigmaC | 11 | 46 | 1.4e-11 | 44.1 | 0.14 | 220.0 | 0.7 |
| pfu_aug1.0_408.1_50846.t1 | 6 | 2 | Reo_sigmaC | 127 | 221 | 1.4e-11 | 44.1 | 0.0028 | 4.6 | 6.3 |
| pfu_aug1.0_408.1_50846.t1 | 6 | 3 | Reo_sigmaC | 188 | 311 | 1.4e-11 | 44.1 | 0.0012 | 2.0 | 7.5 |
| pfu_aug1.0_408.1_50846.t1 | 6 | 4 | Reo_sigmaC | 325 | 439 | 1.4e-11 | 44.1 | 3.7e-05 | 0.061 | 12.5 |
| pfu_aug1.0_408.1_50846.t1 | 6 | 5 | Reo_sigmaC | 455 | 587 | 1.4e-11 | 44.1 | 5.0e-08 | 8.2e-05 | 21.9 |
| pfu_aug1.0_408.1_50846.t1 | 6 | 6 | Reo_sigmaC | 651 | 771 | 1.4e-11 | 44.1 | 4.3e-06 | 0.0071 | 15.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_408.1_50846.t1 | gi|334311175|ref|XP_001380125.2| | 2.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_408.1_50846.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_408.1_50846.t1 atggaaaatgcaggaaagcgccatgaaggaattcaaacagagttgtctgccttgaaaaatcagctggaccttaaggacaa agagattgctcatctgaagcaagagttggaatctgctaaagctgcccatatgtctgactatactgtctttgagaaaatca taactacactggaagagaagatgtctgacttagacataaacagtcatgagaactgtcctaagtgtgatgaggataaagaa aacattcaaccagaagacaatccagaccttaacgagaaggccgtagaaggagtaagaaaaaacagtactaaagaagacaa gtgtaaaagaaaaattgagaaactgcaaaagagattttcggaggttattggaggatacagtgccaagatgatggacttct ctcacaaatatcatgaggctgtcgtcaggggagatgaccttcaacagatcattacacagaaagaaaaatgtcttcaggat ctcaggtatctaaagggcaatgtgtcaagtgtagtagagaatatcaagattaaggatcagagaatatttgaggccaatgc agaaatagcagccttacgagaaaaactcgacaatctggatgaggagaaaaatgttttgaatggaaacatccaatctctga ctgaaaaattccacaatatagagctatcacttgatgaggaacaaacaaagagtaaacaaagcttggagaaattagatgcc cagttacgtttgacacgagacaacctacttgacctgcagactgaacatgatgtcctgcagtgtaaaaacaaggagcttat tagatgtctgaacaaagaaaagggggagagagagacactagcatatcagctgtcagaccaggaggttagctctggtgata tgttaacactggtacagaccaaagaggaattaattacagacctagaaatacaactagaggctaacagggtggaaatgaaa catgtcaaggaatacgaggagaaactggaagtttacagggagaggataggaaaatatgagacagaaataactgctttgga actgaagctggaagacatggagagtgactactttgaaatagccaaagagaacggtaatttactggaggaagctaataaga aagtggatcagctgactgaacttaaatcagagctacttaaacaaatcaacgatctgtcgtccgagaaaagtcagttggtg caggaatactcagaccttgaaaaacaactggaggcatacaagaaggaagttacagagtgtgagcagagcttacagaatgc taacttaaagcttatggaggaggtacaggatgtgaagagcgaaaaggaggagttagaggaaagagttatagcacttgaca atgtcccgagaaaatngggcgagattcacaactttacagagagaatagcggagtataaggcagaacagtacatatcagaa cagacaatacaggacttggactctaaggtagagagtctacaagtggaaaatgaggagctgtcaagtcagtgtgatcatct acaggacaaagtgacggaactcaaacaagagagtgagaaagttgtaggtttacagattcagctgaataatttatcagagg aaaattcctgtttgacagaccaagtaggcaaatctgaggaaacaaagtgtgccatgagaaaggaaatagagaagttggag agtgagttatcagtcatgggagaaaaattgaagaaagagtccgagaatctgcaggataatgaaaaacgattccaagcatt gttacaggaggaagtacataaacgctgtgtgaaggagcaggagtcggagaaattacagaaacaatggacagaggatcaac agaaatggcagctagaaatcaaatctggcatagaattgttggagaaagcacaaagagaggttgataatgagaagcagttg agaaaaacattgatagaggataacagaaaactagagcagaacttcagccgtctggaatccgactcacatgagtataaaaa acaatttcacagatggcaaaaactttatgaggacctgtccacaaaagtagaacccttcatggagcagctagatgcctttg aactagaaaagcaagcattacttggtaggagtaaccacgctcaagcggagatagacaaactcagtacacagtatgccaaa cttctcggccatcagaaccagaaacaaaaaatacatcatatcatcaaaatgaaggaggaaaacaacagtctacgaaagga ggtcacctccctgaaggaacagtgctctaaacagaagagaacaataaccaaactagaggagaagcttgacaccaaagatg gtaagaagagatttgatccctctaaggcattctccttcttcaagggcaaggagaatgatggagctacaccatctgccaca cccctcaaagaaggacaaacaatcaatggcacatactatgcttcacttctgacacagttacgagaaaatattaaacttca gcgccgcggaaagctcacttgttaa |
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Protein
| Protein ID | pfu_aug1.0_408.1_50846.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_408.1_50846.t1 MENAGKRHEGIQTELSALKNQLDLKDKEIAHLKQELESAKAAHMSDYTVFEKIITTLEEKMSDLDINSHENCPKCDEDKE NIQPEDNPDLNEKAVEGVRKNSTKEDKCKRKIEKLQKRFSEVIGGYSAKMMDFSHKYHEAVVRGDDLQQIITQKEKCLQD LRYLKGNVSSVVENIKIKDQRIFEANAEIAALREKLDNLDEEKNVLNGNIQSLTEKFHNIELSLDEEQTKSKQSLEKLDA QLRLTRDNLLDLQTEHDVLQCKNKELIRCLNKEKGERETLAYQLSDQEVSSGDMLTLVQTKEELITDLEIQLEANRVEMK HVKEYEEKLEVYRERIGKYETEITALELKLEDMESDYFEIAKENGNLLEEANKKVDQLTELKSELLKQINDLSSEKSQLV QEYSDLEKQLEAYKKEVTECEQSLQNANLKLMEEVQDVKSEKEELEERVIALDNVPRKXGEIHNFTERIAEYKAEQYISE QTIQDLDSKVESLQVENEELSSQCDHLQDKVTELKQESEKVVGLQIQLNNLSEENSCLTDQVGKSEETKCAMRKEIEKLE SELSVMGEKLKKESENLQDNEKRFQALLQEEVHKRCVKEQESEKLQKQWTEDQQKWQLEIKSGIELLEKAQREVDNEKQL RKTLIEDNRKLEQNFSRLESDSHEYKKQFHRWQKLYEDLSTKVEPFMEQLDAFELEKQALLGRSNHAQAEIDKLSTQYAK LLGHQNQKQKIHHIIKMKEENNSLRKEVTSLKEQCSKQKRTITKLEEKLDTKDGKKRFDPSKAFSFFKGKENDGATPSAT PLKEGQTINGTYYASLLTQLRENIKLQRRGKLTC |
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