Gene
| Gene Model ID | pfu_aug1.0_40924.1_05151 |
|---|---|
| Locus | scaffold40924.1 : 6 ... 5220 : + |
| To GenomeBrowser | scaffold40924.1:6..5220 |
| Genes list of scaffold | scaffold40924.1 |
| Synonym | pfu_aug2.0_28.1_26696 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | twitchin |
| Description | Twitchin partial sequence. BLASTP top hit to AB062882 (Mytius galloprovincialis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_40924.1_05151.t1 | 3 | 1 | I-set | 51 | 90 | 1.2e-34 | 118.0 | 2.3e-07 | 0.00038 | 20.2 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 1 | V-set | 56 | 90 | 2.9e-12 | 46.4 | 0.00057 | 0.95 | 9.3 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 1 | ig | 60 | 87 | 9.5e-13 | 48.0 | 0.00052 | 0.85 | 9.7 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 1 | Ig_2 | 65 | 93 | 2.4e-15 | 56.4 | 0.0018 | 3.0 | 8.0 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 2 | I-set | 104 | 182 | 1.2e-34 | 118.0 | 2.2e-15 | 3.7e-12 | 45.9 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 2 | V-set | 114 | 180 | 2.9e-12 | 46.4 | 8.3e-09 | 1.4e-05 | 24.9 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 2 | Ig_2 | 115 | 181 | 2.4e-15 | 56.4 | 2.4e-09 | 4.0e-06 | 26.8 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 2 | ig | 117 | 177 | 9.5e-13 | 48.0 | 7.4e-10 | 1.2e-06 | 28.5 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 3 | I-set | 202 | 279 | 1.2e-34 | 118.0 | 4.0e-16 | 6.6e-13 | 48.3 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 3 | Ig_2 | 222 | 276 | 2.4e-15 | 56.4 | 1.4e-06 | 0.0022 | 18.0 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 3 | ig | 229 | 266 | 9.5e-13 | 48.0 | 0.0063 | 10.0 | 6.3 |
| pfu_aug1.0_40924.1_05151.t1 | 3 | 3 | V-set | 242 | 273 | 2.9e-12 | 46.4 | 0.0026 | 4.2 | 7.2 |
Transcript
| Transcript ID | pfu_aug1.0_40924.1_05151.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_40924.1_05151.t1 atgacgacagaccctggacggatgtcgtatttgtccttgacctctgacggcacttttggctttcggtttgaaaattgcaa tgttgtcatgtctgagataagaccaaagaccgacggactggttttccggtcccctgaccttgaccaccggaaggaagttg taccaggtggtaaatatgagatccagaaagatggatttaagcgtcgcctgatcgtgaagaattgtcacatgagagatgac ggcaaatatacatgtaaagttttggataaggaaacatcagcctgtctgttcgttgaacctgatatcaagttcttcaagaa gttagaaaacaagagagagaaagagaagggtacacttgtactggagtgtaaggcagctaacccacataaccaaccggtta aatggttaaaggacggcaaacctatcaacaaagatgatccgagagtagaagtagtaaggaagggagagacccacaagctt gtgatttctaacttgaagagagaggacgcaggtctatatgcctgtcaggttggagagagatctactaaatctgacgtcat cgtcgacgagttgcccaagccacccaaggtagatcccaaagatatacctgaggagatcattattaagagaggagaaacca tagctctcgatattccttacataggtgtgcctgtacccacagctcagtggaagaaggacggcacggccctgagtgaggcc gacacagacatacagatgacgcccgatcgtgcccagcttaggattcctgccgcagagagaggagactcaggagagtatga actcactcttagtaacgaagttggaacagaagttatacctgtagctgttagggtattag |
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Protein
| Protein ID | pfu_aug1.0_40924.1_05151.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_40924.1_05151.t1 MTTDPGRMSYLSLTSDGTFGFRFENCNVVMSEIRPKTDGLVFRSPDLDHRKEVVPGGKYEIQKDGFKRRLIVKNCHMRDD GKYTCKVLDKETSACLFVEPDIKFFKKLENKREKEKGTLVLECKAANPHNQPVKWLKDGKPINKDDPRVEVVRKGETHKL VISNLKREDAGLYACQVGERSTKSDVIVDELPKPPKVDPKDIPEEIIIKRGETIALDIPYIGVPVPTAQWKKDGTALSEA DTDIQMTPDRAQLRIPAAERGDSGEYELTLSNEVGTEVIPVAVRVL |
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