Gene
| Gene Model ID | pfu_aug1.0_4099.1_08804 |
|---|---|
| Locus | scaffold4099.1 : 3750 ... 5895 : - |
| To GenomeBrowser | scaffold4099.1:3750..5895 |
| Genes list of scaffold | scaffold4099.1 |
| Synonym | pfu_aug2.0_162.1_07080 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-nanos-like C |
| Description | Reciprocal BLASTP best hit to NCBI Accession ACY92579 (Saccoglossus kowalevskii). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4099.1_08804.t1 | 1 | 1 | zf-nanos | 134 | 188 | 3.3e-27 | 94.2 | 9.7e-31 | 4.8e-27 | 93.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4099.1_08804.t1 | gi|209362535|tpg|DAA06318.1| | TPA_exp: nanos protein, partial [Capitella teleta] | 1.0e-24 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4099.1_08804.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4099.1_08804.t1 atgtctcaatacgaaccgtttcacaactactttggaatagatatcgctggaaacaaggatcttgtaacaaatttaaataa tcttatggactttgcaccttcatcagtttttgatgaaaacagctgtgacagtgattttaattttaattttcgtttggacg tcaacggattcggaacctttgatcccctggacagtattagacgagattcgttggatgattttcgtatgaacggaagagag tgtgatcttgatgagctggacagttatcaggtggaattaagacgacagtcgactaaggagaggctggccatccaacagga gagtaacccggtagtgctagaggtcctcgctttcaaagaacgcaaaagagccgcaaggaaagccaaacagaagagcattt gtgtattttgtaaaaacaatggtgaaacggcgagcatttacacaagtcatgtattgaaagatgaggatggaagagtgacc tgtcccattctccgtaaatatatgtgtcccctgtgcggcatatctggtgacaacgcccatacgattcgctactgtccaaa gaatgagggggagtctgcccccagcctcacgttgagaacgaagcgcatcagtaccggcaagaaacgcaagtcatccgtgg aaacagattaa |
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Protein
| Protein ID | pfu_aug1.0_4099.1_08804.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4099.1_08804.t1 MSQYEPFHNYFGIDIAGNKDLVTNLNNLMDFAPSSVFDENSCDSDFNFNFRLDVNGFGTFDPLDSIRRDSLDDFRMNGRE CDLDELDSYQVELRRQSTKERLAIQQESNPVVLEVLAFKERKRAARKAKQKSICVFCKNNGETASIYTSHVLKDEDGRVT CPILRKYMCPLCGISGDNAHTIRYCPKNEGESAPSLTLRTKRISTGKKRKSSVETD |
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