Gene
| Gene Model ID | pfu_aug1.0_4108.1_52183 |
|---|---|
| Locus | scaffold4108.1 : 1 ... 15473 : + |
| To GenomeBrowser | scaffold4108.1:1..15473 |
| Genes list of scaffold | scaffold4108.1 |
| Synonym | pfu_aug2.0_773.1_11170 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4108.1_52183.t1 | 3 | 1 | AMP-binding | 1 | 108 | 0.0 | 194.2 | 1.9e-14 | 9.4e-11 | 40.7 |
| pfu_aug1.0_4108.1_52183.t1 | 3 | 2 | AMP-binding | 117 | 136 | 0.0 | 194.2 | 6.4e-10 | 3.2e-06 | 25.8 |
| pfu_aug1.0_4108.1_52183.t1 | 3 | 3 | AMP-binding | 212 | 357 | 0.0 | 194.2 | 5.99994e-41 | 3.0e-37 | 128.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4108.1_52183.t1 | gi|345306737|ref|XP_001507836.2| | PREDICTED: long-chain-fatty-acid--CoA ligase 4 isoform X2 [Ornithorhynchus anatinus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4108.1_52183.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4108.1_52183.t1 ttgtaacactttacgcgacattgggatcagatgctattgttcatgggatcaaggaagcagaagtgtcctatgttatcact agttcatccctcctcaataaattcaaggatatcatagataagatgccaaaggtcacacacataatatacataggtcagga gaaagctaagattccagatcagctgaagcacatcaaaatactctccatggaagaagtagagaatataggggcagaaccag acaatattaagacacctgtaacaaagccaagaccagaggacatcgctgttatcatgtatacgagtggatcaactggtgtc cctaaagttaagacacctgtaacaaagccgagaccagaggacatcgctgttatcatgtatacgagtggatcaactggtgt ccctaaaggtaaaacacctacatgtatattgtatggcattgtgatgatattatcagtggtcatactagatgcaataatgg acagactgtacaaaggagtgtgggaaaaagtgaataaaggaagttcattatccaaggcaatgtttgaatttgcttgtgat tataaacaaaaaaggttattaagtggcatggatacacctattttgaataagataatcttttcaaaagtacgagacattct cggtggtcgagttaggatgatgctcagtggaggagctccattgtccgataagacacagagatttatgaacgtgtgtttct gctgtcctgttttacaggggtatggcctaacagaaacatgtggagctggtacaatagctgaagtgacagacttggcaaca ggcagagttggtgcgcctcttacatgctctgaattaagactaagagattggccagagggcaattatactgccaatgataa accaaatccaagaggggagattttacttggaggagggaatattgtcatggggtattacttgatggaagaaaaaaccaagg aagacttcacagaaataaacggagttaggtatttctgtacaggggatatcggagagatagaagatgatggttgcctgaaa gttatagacaggaagaaagatcttgtaaagctacaagcaggagaatatgttgctgtaggccaagtagagactgtactgac gatgcatcaactggtagatcagatcttcctacatgcagacagcagccatgagttcaccatagcctttgtagtacccaatg agaaagcactggagaagctagcgaaggagatgtcaatagagggtagccatgaagatctgtgtaagaataacgatctgaca aaggaagctttaaaacaaataacagaatatggaatcaaatcaaagttagagagatattgtcttccacgacatcttaagct ttgtccggagccatggatgcctgattctggtctcgttaccaacacaatgaaactcaaacgaaaatcttgtgagaaccact accaaaaggacatcaaagtgatgtatagcaaatag |
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Protein
| Protein ID | pfu_aug1.0_4108.1_52183.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4108.1_52183.t1 VTLYATLGSDAIVHGIKEAEVSYVITSSSLLNKFKDIIDKMPKVTHIIYIGQEKAKIPDQLKHIKILSMEEVENIGAEPD NIKTPVTKPRPEDIAVIMYTSGSTGVPKVKTPVTKPRPEDIAVIMYTSGSTGVPKGKTPTCILYGIVMILSVVILDAIMD RLYKGVWEKVNKGSSLSKAMFEFACDYKQKRLLSGMDTPILNKIIFSKVRDILGGRVRMMLSGGAPLSDKTQRFMNVCFC CPVLQGYGLTETCGAGTIAEVTDLATGRVGAPLTCSELRLRDWPEGNYTANDKPNPRGEILLGGGNIVMGYYLMEEKTKE DFTEINGVRYFCTGDIGEIEDDGCLKVIDRKKDLVKLQAGEYVAVGQVETVLTMHQLVDQIFLHADSSHEFTIAFVVPNE KALEKLAKEMSIEGSHEDLCKNNDLTKEALKQITEYGIKSKLERYCLPRHLKLCPEPWMPDSGLVTNTMKLKRKSCENHY QKDIKVMYSK |
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