Gene
| Gene Model ID | pfu_aug1.0_41089.1_12438 |
|---|---|
| Locus | scaffold41089.1 : 1 ... 5135 : - |
| To GenomeBrowser | scaffold41089.1:1..5135 |
| Genes list of scaffold | scaffold41089.1 |
| Synonym | pfu_aug2.0_1506.1_21655 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | SPARC |
| Description | reciprocal BLASTN hit to NCBI Accession AB600273 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_41089.1_12438.t1 | 1 | 1 | SPARC_Ca_bdg | 1 | 104 | 2.2e-26 | 92.1 | 4.9e-30 | 2.4e-26 | 91.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_41089.1_12438.t1 | gi|332688203|dbj|BAK22656.1| | secreted protein [Pinctada fucata] | 1.99993e-41 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_41089.1_12438.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_41089.1_12438.t1 atgaagcagttcccagacagaatgagtaactggacatatgttgtcatgaaggaaatggcccgtcgtcatcaactggatac agaataccttgacctcctaaagaaggcaacagccgacgatcatcacactgatgccatcctctggaaattctgtgaccttg acatcagaccccacgacagaaaagtgagcagacgtgaattattgttcatcattgcctcagtgaagcccatggagcactgc ctggtacctttccttacacaatgtgatgaagacaacgatggtctcatctctcttgtagaatggggcaaatgtcttaacct tgacccag |
|
Protein
| Protein ID | pfu_aug1.0_41089.1_12438.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_41089.1_12438.t1 MKQFPDRMSNWTYVVMKEMARRHQLDTEYLDLLKKATADDHHTDAILWKFCDLDIRPHDRKVSRRELLFIIASVKPMEHC LVPFLTQCDEDNDGLISLVEWGKCLNLDP |
|