Gene
Gene Model ID | pfu_aug1.0_41089.1_12438 |
---|---|
Locus | scaffold41089.1 : 1 ... 5135 : - |
To GenomeBrowser | scaffold41089.1:1..5135 |
Genes list of scaffold | scaffold41089.1 |
Synonym | pfu_aug2.0_1506.1_21655 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | SPARC |
Description | reciprocal BLASTN hit to NCBI Accession AB600273 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_41089.1_12438.t1 | 1 | 1 | SPARC_Ca_bdg | 1 | 104 | 2.2e-26 | 92.1 | 4.9e-30 | 2.4e-26 | 91.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_41089.1_12438.t1 | gi|332688203|dbj|BAK22656.1| | secreted protein [Pinctada fucata] | 1.99993e-41 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-Dshape | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
mantle | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_41089.1_12438.t1 |
---|---|
Definition | - |
>pfu_aug1.0_41089.1_12438.t1 atgaagcagttcccagacagaatgagtaactggacatatgttgtcatgaaggaaatggcccgtcgtcatcaactggatac agaataccttgacctcctaaagaaggcaacagccgacgatcatcacactgatgccatcctctggaaattctgtgaccttg acatcagaccccacgacagaaaagtgagcagacgtgaattattgttcatcattgcctcagtgaagcccatggagcactgc ctggtacctttccttacacaatgtgatgaagacaacgatggtctcatctctcttgtagaatggggcaaatgtcttaacct tgacccag |
Protein
Protein ID | pfu_aug1.0_41089.1_12438.t1 |
---|---|
Definition | - |
>pfu_aug1.0_41089.1_12438.t1 MKQFPDRMSNWTYVVMKEMARRHQLDTEYLDLLKKATADDHHTDAILWKFCDLDIRPHDRKVSRRELLFIIASVKPMEHC LVPFLTQCDEDNDGLISLVEWGKCLNLDP |