Gene
| Gene Model ID | pfu_aug1.0_41270.1_55812 |
|---|---|
| Locus | scaffold41270.1 : 1 ... 4549 : + |
| To GenomeBrowser | scaffold41270.1:1..4549 |
| Genes list of scaffold | scaffold41270.1 |
| Synonym | pfu_aug2.0_401.1_04109 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_41270.1_55812.t1 | 4 | 1 | FF | 2 | 50 | 0.0 | 162.1 | 2.1e-20 | 1.6e-16 | 59.9 |
| pfu_aug1.0_41270.1_55812.t1 | 4 | 2 | FF | 107 | 158 | 0.0 | 162.1 | 8.8e-12 | 6.5e-08 | 32.4 |
| pfu_aug1.0_41270.1_55812.t1 | 4 | 3 | FF | 165 | 215 | 0.0 | 162.1 | 1.7e-14 | 1.3e-10 | 41.0 |
| pfu_aug1.0_41270.1_55812.t1 | 4 | 4 | FF | 224 | 280 | 0.0 | 162.1 | 2.8e-16 | 2.1e-12 | 46.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_41270.1_55812.t1 | gi|240994921|ref|XP_002404562.1| | transcription elongation regulator, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 2 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_41270.1_55812.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_41270.1_55812.t1 ttgaaggcagacttcatacagctcctaaaggaaacctcggacattgatcgacactctcgttggagcgacatcaaacgtaa gattgactctgatccacgttacaaagctgtggacagtagctcacgaagggaggactggtttaaggactacactaagaaac tggaagatacgccagattctgaggatgaagagaaaaaagagcgtgagaaacaggaaagaatcgaagctagtatccgtaaa cgtacagaagaagtcgaacgctcactatcaaactcgctaagagagcgagacaaggaaagagagcaacataagagagatga ggccgttcagttgttcaatgctctcttagtggatctggtgaaaaactctgaagcttcatggagggacactcgtaaacaac tcagaaaggaccatcgatgggacatggctgatcaacttgatcgtgaggagaaagaaaaactatttgaggaacatatagaa agcttgggcaaaaagaacaaagaaatgttccacaaacttctggatgaaactgatatcagcctgactgcctcttggaaaga agtgaagaaacagattaaagaagatcctagatatatcaaattctcatctagtgacaggaaaagagagaaggaattcaacg attacatacatgagaaatatgtgaatggtaaagctgaattcagagaattgttgaaggagaccaaactcattacctacaaa tccaagaaattactagaggaatctgattcccatttgaaagacatagaaaagatccttgagaaggataagcgatacctgct actggactgtgtgccagaggagagggccaaaatcctcctatcgtacatcgaggatttacatcgcaagggtgtccctccgc cccctactgcatcagaacccactcgcagaactaccaaatag |
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Protein
| Protein ID | pfu_aug1.0_41270.1_55812.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_41270.1_55812.t1 LKADFIQLLKETSDIDRHSRWSDIKRKIDSDPRYKAVDSSSRREDWFKDYTKKLEDTPDSEDEEKKEREKQERIEASIRK RTEEVERSLSNSLRERDKEREQHKRDEAVQLFNALLVDLVKNSEASWRDTRKQLRKDHRWDMADQLDREEKEKLFEEHIE SLGKKNKEMFHKLLDETDISLTASWKEVKKQIKEDPRYIKFSSSDRKREKEFNDYIHEKYVNGKAEFRELLKETKLITYK SKKLLEESDSHLKDIEKILEKDKRYLLLDCVPEERAKILLSYIEDLHRKGVPPPPTASEPTRRTTK |
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