Gene
| Gene Model ID | pfu_aug1.0_4138.1_16302 |
|---|---|
| Locus | scaffold4138.1 : 7776 ... 13703 : + |
| To GenomeBrowser | scaffold4138.1:7776..13703 |
| Genes list of scaffold | scaffold4138.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4138.1_16302.t1 | 6 | 1 | zf-C2H2_4 | 3 | 30 | 4.2e-11 | 42.3 | 0.29 | 480.0 | 1.4 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 1 | zf-H2C2_2 | 23 | 46 | 3.1e-39 | 131.3 | 7.0e-11 | 1.1e-07 | 31.7 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 1 | C1_3 | 33 | 43 | 7.2e-06 | 25.9 | 0.00014 | 0.23 | 11.5 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 1 | zf-H2C2_5 | 36 | 58 | 4.8e-17 | 61.0 | 1.4e-07 | 0.00023 | 21.2 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 1 | zf-C2H2 | 36 | 58 | 1.7e-15 | 56.3 | 9.5e-07 | 0.0016 | 18.6 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 2 | zf-C2H2_4 | 36 | 58 | 4.2e-11 | 42.3 | 2.6e-05 | 0.043 | 14.1 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 2 | zf-H2C2_2 | 50 | 74 | 3.1e-39 | 131.3 | 3.5e-11 | 5.8e-08 | 32.6 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 2 | C1_3 | 62 | 71 | 7.2e-06 | 25.9 | 0.0076 | 13.0 | 5.9 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 2 | zf-H2C2_5 | 64 | 86 | 4.8e-17 | 61.0 | 6.2e-08 | 0.0001 | 22.3 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 2 | zf-C2H2 | 64 | 86 | 1.7e-15 | 56.3 | 6.1e-08 | 0.0001 | 22.4 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 3 | zf-C2H2_4 | 64 | 86 | 4.2e-11 | 42.3 | 2.1e-06 | 0.0034 | 17.5 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 3 | zf-H2C2_2 | 78 | 102 | 3.1e-39 | 131.3 | 1.1e-09 | 1.9e-06 | 27.8 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 3 | C1_3 | 91 | 100 | 7.2e-06 | 25.9 | 0.024 | 39.0 | 4.3 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 3 | zf-H2C2_5 | 92 | 114 | 4.8e-17 | 61.0 | 1.9e-06 | 0.0031 | 17.6 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 3 | zf-C2H2 | 92 | 114 | 1.7e-15 | 56.3 | 2.0e-06 | 0.0033 | 17.6 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 4 | zf-C2H2_4 | 92 | 114 | 4.2e-11 | 42.3 | 0.0011 | 1.8 | 9.0 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 4 | zf-H2C2_2 | 107 | 127 | 3.1e-39 | 131.3 | 1.5e-10 | 2.5e-07 | 30.6 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 4 | C1_3 | 117 | 128 | 7.2e-06 | 25.9 | 1.9e-05 | 0.031 | 14.2 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 4 | zf-H2C2_5 | 120 | 142 | 4.8e-17 | 61.0 | 7.6e-07 | 0.0012 | 18.8 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 4 | zf-C2H2 | 120 | 142 | 1.7e-15 | 56.3 | 3.2e-07 | 0.00053 | 20.1 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 5 | zf-C2H2_4 | 120 | 142 | 4.2e-11 | 42.3 | 3.7e-06 | 0.006 | 16.8 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 5 | zf-H2C2_2 | 134 | 159 | 3.1e-39 | 131.3 | 5.3e-13 | 8.7e-10 | 38.4 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 5 | C1_3 | 145 | 155 | 7.2e-06 | 25.9 | 0.031 | 51.0 | 4.0 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 5 | zf-H2C2_5 | 148 | 170 | 4.8e-17 | 61.0 | 0.0013 | 2.1 | 8.7 |
| pfu_aug1.0_4138.1_16302.t1 | 5 | 5 | zf-C2H2 | 148 | 170 | 1.7e-15 | 56.3 | 8.6e-05 | 0.14 | 12.5 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 6 | zf-C2H2_4 | 148 | 170 | 4.2e-11 | 42.3 | 0.0002 | 0.33 | 11.3 |
| pfu_aug1.0_4138.1_16302.t1 | 6 | 6 | zf-H2C2_2 | 165 | 172 | 3.1e-39 | 131.3 | 0.71 | 1200.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4138.1_16302.t1 | gi|260781334|ref|XP_002585772.1| | hypothetical protein BRAFLDRAFT_111167 [Branchiostoma floridae] | 1.96182e-44 |
Transcript
| Transcript ID | pfu_aug1.0_4138.1_16302.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4138.1_16302.t1 atgctctgtaaaatatgccttgatgcaaatagaaacaatacctttacacaagcgcacacaaccactctgaccattcataa acgccaacacaccggagaaaagccttataaatgtgatgaatgtgatttcaggactaagcagagatctcatctaaagacac ataaaagaattcacacaggagaaaaaccctatcaatgtaacgaatgtgactataggaccacccagtcatcacatcttaaa tcacacatgctcacacacacaggggaaaaacctttccagtgtaaggaatgcgacttctgcactactaccccagccaaact aagagttcatcagagacaacacacaggagaaaagccatacaaatgtacacagtgtgacttcgcctctcctcaatccagcg ctttgagagtacacattaggaaacacactggtgaaaaaccgtatagatgtgatatgtgcaactacagtactgtgactaga aaccggctctttcaacatgccaaaacacataaacaaattaaagaagaggcagaaaaaatcaaaaaagaagtagaagactt agatatggatcagttgtaa |
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Protein
| Protein ID | pfu_aug1.0_4138.1_16302.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4138.1_16302.t1 MLCKICLDANRNNTFTQAHTTTLTIHKRQHTGEKPYKCDECDFRTKQRSHLKTHKRIHTGEKPYQCNECDYRTTQSSHLK SHMLTHTGEKPFQCKECDFCTTTPAKLRVHQRQHTGEKPYKCTQCDFASPQSSALRVHIRKHTGEKPYRCDMCNYSTVTR NRLFQHAKTHKQIKEEAEKIKKEVEDLDMDQL |
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