Gene
| Gene Model ID | pfu_aug1.0_4138.1_16304 |
|---|---|
| Locus | scaffold4138.1 : 20286 ... 37454 : + |
| To GenomeBrowser | scaffold4138.1:20286..37454 |
| Genes list of scaffold | scaffold4138.1 |
| Synonym | pfu_aug2.0_108.1_26862 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4138.1_16304.t1 | 1 | 1 | 3HCDH_N | 34 | 203 | 0.0 | 170.9 | 0.0 | 0.0 | 170.4 |
| pfu_aug1.0_4138.1_16304.t1 | 1 | 1 | 3HCDH | 205 | 302 | 3.2e-36 | 123.6 | 9.90001e-40 | 7.4e-36 | 122.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4138.1_16304.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4138.1_16304.t1 atggattgtcgctcagagataaaaggatttgaccttgatctagatgtgtttaacagtaaagtgagagattgcatgacaac actggctgaaaatttgaaggtagcagcatcaacaggccatcaagtatctatggtggaccaatcagatgacatcctgaaca agtctaaagccaacataggaaaaagcctacaaagagttgttaaaaagaaatttgctgatgatccaaagggaggggagcag ttcctgagtgagacaatggggaggattgagacatcaacctctgctgtagcctgtatggagaaaacagatctggtcattga agctatagtagaaaacctagagatcaaacagaagctgttctcagagctggatgcagtggcaccaaaacataccattttca caagtaatacgtcttccattcctatcggagatattgcgtcatcaacaaaacgtctggatagatttggtggtttacacttt ttcaatcctgtcccagtgatgaagcttttagaggttatccgaatccctgcaactagtgatgaaactttcaacaaactatt agcatttggcaaagacatgcaaaaagcaactgtcaattgcaaggacacccccggattcattgtcaatcgattactggtac catacatgattgaagctgtacgtatgctggaaagaggagatgctagtccacgggatattgacactgccatgaagcttggt gccggctatcccatgggaccttttgaactcagtgactatgtggggttggataccatgaagtttatattagatggatggtc caaaaattatccagagaatcctttatttaggccaagcccaatgctagacaaacttgtgggtgagggtaagctaggagcca agtcaggggagggcttctattcctataagaagtag |
|
Protein
| Protein ID | pfu_aug1.0_4138.1_16304.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4138.1_16304.t1 MDCRSEIKGFDLDLDVFNSKVRDCMTTLAENLKVAASTGHQVSMVDQSDDILNKSKANIGKSLQRVVKKKFADDPKGGEQ FLSETMGRIETSTSAVACMEKTDLVIEAIVENLEIKQKLFSELDAVAPKHTIFTSNTSSIPIGDIASSTKRLDRFGGLHF FNPVPVMKLLEVIRIPATSDETFNKLLAFGKDMQKATVNCKDTPGFIVNRLLVPYMIEAVRMLERGDASPRDIDTAMKLG AGYPMGPFELSDYVGLDTMKFILDGWSKNYPENPLFRPSPMLDKLVGEGKLGAKSGEGFYSYKK |
|