Gene
| Gene Model ID | pfu_aug1.0_4143.1_37810 |
|---|---|
| Locus | scaffold4143.1 : 1 ... 25575 : - |
| To GenomeBrowser | scaffold4143.1:1..25575 |
| Genes list of scaffold | scaffold4143.1 |
| Synonym | pfu_aug2.0_2787.1_25534 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4143.1_37810.t1 | 3 | 1 | MMS19_N | 40 | 300 | 0.0 | 302.6 | 0.0 | 0.0 | 296.1 |
| pfu_aug1.0_4143.1_37810.t1 | 3 | 1 | MMS19_C | 249 | 273 | 0.0 | 208.7 | 0.064 | 320.0 | -0.3 |
| pfu_aug1.0_4143.1_37810.t1 | 3 | 2 | MMS19_C | 383 | 435 | 0.0 | 208.7 | 0.034 | 170.0 | 0.7 |
| pfu_aug1.0_4143.1_37810.t1 | 3 | 2 | MMS19_N | 396 | 481 | 0.0 | 302.6 | 0.021 | 100.0 | 2.0 |
| pfu_aug1.0_4143.1_37810.t1 | 3 | 3 | MMS19_C | 514 | 872 | 0.0 | 208.7 | 0.0 | 0.0 | 208.7 |
| pfu_aug1.0_4143.1_37810.t1 | 3 | 3 | MMS19_N | 729 | 756 | 0.0 | 302.6 | 0.024 | 120.0 | 1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4143.1_37810.t1 | gi|260787102|ref|XP_002588594.1| | hypothetical protein BRAFLDRAFT_131757 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4143.1_37810.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4143.1_37810.t1 atgtctgcgcccatttggcaagtggcaatcgacaacttcgtcgacaatgatgtttcagaactttcatcgatagttaacgg tttgctcagcagaaatccatcactgttggacataatagagtatgcagggaagcacttgactaatgagagccccaccatta gatcacgagttatcagacttcttgctgacgttctacaccagattcctgtagatcttctctccacagatgaagtaaaggta ctggtcgtatacttctgtgagagattgctagatcatcattcggttcaacctccggctctcaatggacttctcgcactgtc tggctttgaaaatcttcctgagggatgtgcagatggaatttgtcgaagcatatttcaaaatgttcagactcaaactctgg ctcaggatgatcgcagaattgtctacacaatattttctactctcttagattccaaattatcagagctgcagaaaatggaa ggtgattttgtgcttggatacatacaggccatggatgctgagaaagatcctcgtaatcttactctcgcctttcattgtgc tagaattgtcatcaagaattttccgttaggtgtgtttgtggaggacatgtttgaggtggtttcttgttacttccccattg acttcactcctcctgccaatgatccacatggtataacgagagatgaccttatttctggactccgatcttgtcttatagcc tctcctaagtttggtactctgtgtttaccactcctcctggaaaaactgacgtcagatatccagagtgcaaagtttgattc cttacagactttgcgtgcaggtgccgcagtgtttggtccagagtgtttaaaagagtaccaaggctcccttttcagatgtg ttaaacaagaggtcttttcctccggcagtagtgagttagaagaggccgccctacatgcacttacatctatatcagttact ttgtctcctacattaggaataagcacagttgactctgatgttgatgaattcattaaagaagtgtttcaagatataggtag gcacttgaaggatgaggacctgcggttgtttgtgccgacctgtcgtttattacgagccatacaggcgggttctggacacg catgtgccgtaatattgtcacgtgttgtaccacttctggtagatatgtataacagaaattctgtgtcaacaaaaaggaaa aaggtgctagagatgcttctttcatttttagagaaaacaacatattttacagagtcaaaagttgagaaagtcctcctgga gcatgcttcagatatttcctccattttgatgttggcggcctcggacactgaccagtctctgtcggccgtagcgatacacg gcttggcatcggtactgtccatcaaagtactcagctccaaccaggatagggctgtactactctcattgttatcacagaaa accttcagtgattccgcagaaatcaggaagagttgtgaagctcccatcaaagttttggcatcaacagattgtgatatgat tcaaacagaactgctgcctaaattatatgaacagatgaagtcagataagatggatgttgatggcgataataatgagtcta cgcatgctgtgtttagaatgctgtctataatcgcttgttctagtaaccttaaacttcttagagaaatattacaacatctt acatcatacctacatgttttatcaaaagagagataccagtctgacaatgcagtgttacacaagtcaatatgtatatgtga gtgtatgtgtgatatagcgagtcactgtgtcaaagacccagaaactctgagcctcgtgtatgaactgacggtaccggaga tatacacgttgttagttgttggtgctataggaagtaataaagatggctgctgtatgtgtcatgataaagtcctggaatgt acggagaatctagtacgactcgtcatgtgtaatgtcgtccaatcaaaagttgctgagatgtgtgtgaagatggatgactt attccttaaaaatgatacacaaatgatacaggaagatacagacgtagtagagaaatgggctccactgaagccttcatctc catggcaacagactcagctgatttccatggcaacacctgtgatatgttcctgcccaaaacaggttaaccttcctaatgtg gacagatacttagaactacttactgagatgtccttacagagtacacatggattgaccagacacaagtctgtaaaatgtat agctggtttgatcaacaagtatcctgatggagaacagctctctctcttcttaaaatcaagacaacatcattttgatcaag taatgaatgttgctcaaaattcaagtgagaaagaccataatctgaatctatggatctgggtcactaaagctctggttctt cgaggacatgcggatgggaaatcttttttcacaaagttgatagacatgctgaatgatgtagaagctggtgaacaagcagc agagggagttcatataatcttgaatgactttccagacatactgaacaaggcgatgcatgcgaacataaggatgatgtata aacagaggttgttcacagagaatgttcatgcgttggtacaaggctttcatcaagctatagagggtagggttgtcatatta ttgtacatgtactag |
|
Protein
| Protein ID | pfu_aug1.0_4143.1_37810.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4143.1_37810.t1 MSAPIWQVAIDNFVDNDVSELSSIVNGLLSRNPSLLDIIEYAGKHLTNESPTIRSRVIRLLADVLHQIPVDLLSTDEVKV LVVYFCERLLDHHSVQPPALNGLLALSGFENLPEGCADGICRSIFQNVQTQTLAQDDRRIVYTIFSTLLDSKLSELQKME GDFVLGYIQAMDAEKDPRNLTLAFHCARIVIKNFPLGVFVEDMFEVVSCYFPIDFTPPANDPHGITRDDLISGLRSCLIA SPKFGTLCLPLLLEKLTSDIQSAKFDSLQTLRAGAAVFGPECLKEYQGSLFRCVKQEVFSSGSSELEEAALHALTSISVT LSPTLGISTVDSDVDEFIKEVFQDIGRHLKDEDLRLFVPTCRLLRAIQAGSGHACAVILSRVVPLLVDMYNRNSVSTKRK KVLEMLLSFLEKTTYFTESKVEKVLLEHASDISSILMLAASDTDQSLSAVAIHGLASVLSIKVLSSNQDRAVLLSLLSQK TFSDSAEIRKSCEAPIKVLASTDCDMIQTELLPKLYEQMKSDKMDVDGDNNESTHAVFRMLSIIACSSNLKLLREILQHL TSYLHVLSKERYQSDNAVLHKSICICECMCDIASHCVKDPETLSLVYELTVPEIYTLLVVGAIGSNKDGCCMCHDKVLEC TENLVRLVMCNVVQSKVAEMCVKMDDLFLKNDTQMIQEDTDVVEKWAPLKPSSPWQQTQLISMATPVICSCPKQVNLPNV DRYLELLTEMSLQSTHGLTRHKSVKCIAGLINKYPDGEQLSLFLKSRQHHFDQVMNVAQNSSEKDHNLNLWIWVTKALVL RGHADGKSFFTKLIDMLNDVEAGEQAAEGVHIILNDFPDILNKAMHANIRMMYKQRLFTENVHALVQGFHQAIEGRVVIL LYMY |
|