Gene
| Gene Model ID | pfu_aug1.0_4144.1_52192 |
|---|---|
| Locus | scaffold4144.1 : 31790 ... 61085 : - |
| To GenomeBrowser | scaffold4144.1:31790..61085 |
| Genes list of scaffold | scaffold4144.1 |
| Synonym | pfu_aug2.0_291.1_03958 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4144.1_52192.t1 | 1 | 1 | AAA_7 | 2 | 86 | 7.2e-13 | 48.2 | 1.4e-15 | 1.7e-12 | 47.0 |
| pfu_aug1.0_4144.1_52192.t1 | 2 | 1 | AAA_8 | 254 | 348 | 8.1e-36 | 123.3 | 1.7e-26 | 2.1e-23 | 82.6 |
| pfu_aug1.0_4144.1_52192.t1 | 2 | 2 | AAA_8 | 348 | 421 | 8.1e-36 | 123.3 | 2.2e-13 | 2.8e-10 | 39.6 |
| pfu_aug1.0_4144.1_52192.t1 | 1 | 1 | MT | 435 | 777 | 0.0 | 163.2 | 0.0 | 0.0 | 163.2 |
| pfu_aug1.0_4144.1_52192.t1 | 2 | 1 | AAA_9 | 653 | 691 | 0.0 | 190.8 | 0.87 | 1100.0 | -1.8 |
| pfu_aug1.0_4144.1_52192.t1 | 2 | 2 | AAA_9 | 801 | 1027 | 0.0 | 190.8 | 0.0 | 0.0 | 190.8 |
| pfu_aug1.0_4144.1_52192.t1 | 2 | 1 | Dynein_heavy | 1161 | 1251 | 0.0 | 190.7 | 3.4e-20 | 4.2e-17 | 61.4 |
| pfu_aug1.0_4144.1_52192.t1 | 2 | 2 | Dynein_heavy | 1251 | 1373 | 0.0 | 190.7 | 5.1e-40 | 6.3e-37 | 126.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4144.1_52192.t1 | gi|260804805|ref|XP_002597278.1| | hypothetical protein BRAFLDRAFT_118159 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_4144.1_52192.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4144.1_52192.t1 atgcaggataagcctttgctgtttgtcggtcctacagggactggaaagtcagccatctccaataactacctgatccagct accaaaggataaatatgtcatcaacaatattaacttctccgctcaaacctcagccaatcaaacacaagatatcatattct caaaactagacaggaggaagaagggtatatttggacctacaccgggtaagaagctgatagtgtttgtagatgacttgaac atgccagctaaagagagccacgtttacactatcaaagttttcttggtcaaagtccgtcaaagaaaacttggtcaaagtta tcttggacaaagttgtctgtttacactatcaaagttctttgaacgacttgtacaagaaaacgtgggtgtgttattgttga agcctggcgtggtacctgagggtagtacagagaacggacataagataatacgtctgtgggtacatgaggtctacagggtc ttctatgacagacttatcaacgatgaagatagagaggctttcttcaaacttgtcaagacgagtgtggagtcccagtttaa ggaaaagatgaacaacctgttcggacaccttttacctgagcctggaaagccagtgacagatgataacatcaggagtctgc tgtttggggattacctgtccaagggcaaagaggaaaaattctatgatgaaataacaaaccttgatgaattaagagagaca atagagcattatctagaggattataacatgatgagtaaggcacctatggatctggtcatgtttagatttgccatagaaca tatatctaggattagccgagtacttaaacagccaaatggtcactgtctcctagtgggtattggaggtagtggcagacaga gtgcttccaagctggctgcttttatgtcagactttgaactcttccaaatcgagattactaaaaactacacaacctccgaa tggagagatgatctacgcaaaatgatgagacgtgccggggacgaaggaatatctacagtctttctcttcggtgatcatca aattaaggcctggccggctgatgccttagagttagttgcaaacaaattcttggaggatgtagagatggcagacgaggtca gaacacaaaccattgtcatgtgtaaacactttcatgaaagtgtcatctcactctcagaaaaatactttgacacgttgaga aggagaaactatgtgacacccacatcataccttgaactgattaaaaccttcaagaatctactggacaagaaacgactgga gatactaacactcaagaacagatatattgtaggactagagaaactagaattttctgagtcacaggtgaatgtgatgcagc aggagttggtagagttaaagccccagctgataaagacgagtaaggagaccgaggaactgatcgcgtttatcagtaaggag agtatagaggtggaggctgtaaaaaagaacgtggaagctgacgaggcggtggctacagaggccgctagtgctgccagggc tatcaaggatgagtgtgaggagcagttaaacctggctttaccggctctgaacgctgctttgtcagctctggacacactca aacagaatgatatcaccatcgtcaaatccatgaagaacccaccatctggtgttaaactggtcatggaatctgtctgcatt atgaagggtataaaaccagagagaaaagttgatggcacaggcaaaccatttgatgattactggccagctgctcaaaagat gttgggtgatttgaaattcctggattccctgagggaatatgataaggataatatccctacatcaatcatgcagaaaatcc gatctaaatatctggataatccagagtttaatccagccatcgtcaggaatgtgtcgtcagcctgtgagggattgtgtaaa tgggtcaaagcattgtctgtctatgataaagtcataaaggttgtatctcccaaacgtaaaagtttagaggaggctgagtc tgttctagccacccagatggcacagctccatcaaaaacaggctgagttaaaggctatcactgacaaactgaacggtctga aggacgacctggctaacaaacaggaggaaaaaaagaacttggaggacaatatagaacttaccaagatcaagatagaaaga gcagaaaaactgatcagtggattaggtggggagaaagagaggtggacacagaatgttgacgagctagcagagacgtatga caacatagtaggtgacgtattactgtctgccagtgtagtagcgtacctaggaccgtttattctggattacagacaggaga agctgaaggaatggtacacgatgtgtaaacagagggatataccactgtcagaaaacttctctttgaaccagacattaggt gacccagtcagaatacgtgactggcagatagctggacttcctgtagacaattattcactagagaatgccataatagtgac cagtgctaataggtggccattgatgattgatcctcaaggccaagccaataagtggatcaaaaacatggagaaatctaata agctggaggtggttaaaatgagtgaccctaatttcagtagaaatctggaaaattgtgttcagtttggtaatccttgtcta attgaaaatgtcggagaggagctggatccaatcctcgacacaatattactaaaacagacgtttaaacagcataatatgga gtacatcagagttggggaccacatcatacagtatagcagggacttcaaactgtacatcaccacacgattacgcaatcctc attatcttcctgaagtctccgttaaggtgacacttctgaacttcatgatcaccctgctaggattagaggatcagttactg ggtattgtggctgctaaagaaaaacccgaactagaagataccaaaaacaaacttatcgtagaaagtgctaaaaatagacg acaactcaaggaaatagaagataaaattctggaagtgttgtcatcatcacagggtaatatcctggaggatgagacagcca tagaaattctgtcgtcaagtaaagtgctatcagaggaaataacggagaaacagaagattgctacaaagacagaggaggag atagacaatgtgcgagacggctataaaccagtcgctaagcatgggagtatcctgttctttgtgatatcagatttagctaa cattgaccctatgtatcagtattccctggcatggtttatcaatctctatctacagtcgattataaacagcgagccttcac cagatctggatgtaaggatagagaacctgaatgagcatttcacatacagtatctacaaaaacgtgtgccgatctctgttt gagaaggataaattactcttctccttcctcctgtgtatcggtatagccaaacaaaaacagctgcaaggctgtccatttta cagcattcttacacataccatactgattaagtactatcctgttttacagatgtttatcaatgattatgatgaccctccat tagaagctctatcctacctgaccggtcagtgtaactatggtgggcgtgtcacagatgacctggatagacgactgatatca agtctgctggacatattctactgtgagccaaccatatacgacaacacctacaagttctcatctagcggcacatattacgc tcctaagaaaggcacgtacgaggattatgtggagtatatcaggagtttaccacttataccacatccggaggttgtgagga ccagcttacaggacataaagaaagccatcaaaggactggttgtcatgtctacagaactagaggatgtgtttgacagtatg atggtgggaaaggtaccagctatgtgggcagcaaagtcttacccttccctcaaaccacttggcagctatataactgatct gttagctagactgcaattctttaaggactggctttttggaggagcccctacagtgttttggatatcaggattttacttca cccagtcgtttctgactggagtgttacagaattatgctaggaagtacaagattccaatagactatctgggatttgagttt gaggtcacaggccatgaacagaacatgagtagtagaccgattacaactgttacaacattcatatatgataaatag |
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Protein
| Protein ID | pfu_aug1.0_4144.1_52192.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4144.1_52192.t1 MQDKPLLFVGPTGTGKSAISNNYLIQLPKDKYVINNINFSAQTSANQTQDIIFSKLDRRKKGIFGPTPGKKLIVFVDDLN MPAKESHVYTIKVFLVKVRQRKLGQSYLGQSCLFTLSKFFERLVQENVGVLLLKPGVVPEGSTENGHKIIRLWVHEVYRV FYDRLINDEDREAFFKLVKTSVESQFKEKMNNLFGHLLPEPGKPVTDDNIRSLLFGDYLSKGKEEKFYDEITNLDELRET IEHYLEDYNMMSKAPMDLVMFRFAIEHISRISRVLKQPNGHCLLVGIGGSGRQSASKLAAFMSDFELFQIEITKNYTTSE WRDDLRKMMRRAGDEGISTVFLFGDHQIKAWPADALELVANKFLEDVEMADEVRTQTIVMCKHFHESVISLSEKYFDTLR RRNYVTPTSYLELIKTFKNLLDKKRLEILTLKNRYIVGLEKLEFSESQVNVMQQELVELKPQLIKTSKETEELIAFISKE SIEVEAVKKNVEADEAVATEAASAARAIKDECEEQLNLALPALNAALSALDTLKQNDITIVKSMKNPPSGVKLVMESVCI MKGIKPERKVDGTGKPFDDYWPAAQKMLGDLKFLDSLREYDKDNIPTSIMQKIRSKYLDNPEFNPAIVRNVSSACEGLCK WVKALSVYDKVIKVVSPKRKSLEEAESVLATQMAQLHQKQAELKAITDKLNGLKDDLANKQEEKKNLEDNIELTKIKIER AEKLISGLGGEKERWTQNVDELAETYDNIVGDVLLSASVVAYLGPFILDYRQEKLKEWYTMCKQRDIPLSENFSLNQTLG DPVRIRDWQIAGLPVDNYSLENAIIVTSANRWPLMIDPQGQANKWIKNMEKSNKLEVVKMSDPNFSRNLENCVQFGNPCL IENVGEELDPILDTILLKQTFKQHNMEYIRVGDHIIQYSRDFKLYITTRLRNPHYLPEVSVKVTLLNFMITLLGLEDQLL GIVAAKEKPELEDTKNKLIVESAKNRRQLKEIEDKILEVLSSSQGNILEDETAIEILSSSKVLSEEITEKQKIATKTEEE IDNVRDGYKPVAKHGSILFFVISDLANIDPMYQYSLAWFINLYLQSIINSEPSPDLDVRIENLNEHFTYSIYKNVCRSLF EKDKLLFSFLLCIGIAKQKQLQGCPFYSILTHTILIKYYPVLQMFINDYDDPPLEALSYLTGQCNYGGRVTDDLDRRLIS SLLDIFYCEPTIYDNTYKFSSSGTYYAPKKGTYEDYVEYIRSLPLIPHPEVVRTSLQDIKKAIKGLVVMSTELEDVFDSM MVGKVPAMWAAKSYPSLKPLGSYITDLLARLQFFKDWLFGGAPTVFWISGFYFTQSFLTGVLQNYARKYKIPIDYLGFEF EVTGHEQNMSSRPITTVTTFIYDK |
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