Gene
| Gene Model ID | pfu_aug1.0_4150.1_66895 |
|---|---|
| Locus | scaffold4150.1 : 6516 ... 20884 : + |
| To GenomeBrowser | scaffold4150.1:6516..20884 |
| Genes list of scaffold | scaffold4150.1 |
| Synonym | pfu_aug2.0_1164.1_14834 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | opsin-3-like, partial |
| Description | Similar to BAA22218.1| Go-coupled rhodopsin [Mizuhopecten yessoensis |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4150.1_66895.t1 | 3 | 1 | 7tm_1 | 40 | 82 | 7.1e-16 | 58.1 | 1.4e-08 | 0.00011 | 21.5 |
| pfu_aug1.0_4150.1_66895.t1 | 3 | 2 | 7tm_1 | 85 | 185 | 7.1e-16 | 58.1 | 1.7e-13 | 1.3e-09 | 37.6 |
| pfu_aug1.0_4150.1_66895.t1 | 3 | 3 | 7tm_1 | 290 | 329 | 7.1e-16 | 58.1 | 6.0e-05 | 0.45 | 9.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4150.1_66895.t1 | gi|3024255|sp|O15974.1|OPSD2_PATYE | 1.0e-16 |
Transcript
| Transcript ID | pfu_aug1.0_4150.1_66895.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4150.1_66895.t1 atgattctgagaactaggggcgaaccaagccatgacctagaagacgtttcctacgctatgagaagtagttccccatcgta taattattctgtgcgtaaagagatagaaaaatatttcaactttgcttactgggtatttggacacagcggctgtcaagttt atgccttcatttgttatctatgtgggtgtaatggaataatgacgcatgctgccatcagctatttccgctatgttgtaatg tgtaaattcagattcgtgcctctggtcatcgtagggtattcatatatcaaaatagtcaaccaagcgaggaaattgtccct tgaaagacttcgaacactttctatgcctggagatatacgctcaatgttcatcctaaatttggaacgcaaagtcacatggg tatgtttcctgatgactttgacatttttggtcacgtggttaccttatgccatcatttccctcgtatttgctttcggcttt tctttcgagtctcctgtagttatattgccaacaatgttcgcaaaatcatcatgcgcatacaatccatttatatactgttt cacacacgaaaagtttcgcgatgctgttctgaagatattttgcaacaggaaaaacaaagtacatatcggggacgaaagga atgaaagtctaccatggagaaccgaagaacgagaagcaactgtgtcttaccataggtgggtaggagctaggaacatgttc acagcatcgtcgttccaagacggaaccgactgttcgtgttcccagaaatacattcttcaagaggacatagtaagaataca catggaaccgcgtgctccagtcatggaagctgctgggtctttggacacagcggccgtcaactttatgctttcatttgttt atattctatgtggatgtaatggaataatgacgcatactgccatcagctatttccgttatgtcgtcatgtagtctattttg gacataggcgccaatcgtaggttggaacggatacgaaacagaaccgtacaatgtttcgtgtag |
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Protein
| Protein ID | pfu_aug1.0_4150.1_66895.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4150.1_66895.t1 MILRTRGEPSHDLEDVSYAMRSSSPSYNYSVRKEIEKYFNFAYWVFGHSGCQVYAFICYLCGCNGIMTHAAISYFRYVVM CKFRFVPLVIVGYSYIKIVNQARKLSLERLRTLSMPGDIRSMFILNLERKVTWVCFLMTLTFLVTWLPYAIISLVFAFGF SFESPVVILPTMFAKSSCAYNPFIYCFTHEKFRDAVLKIFCNRKNKVHIGDERNESLPWRTEEREATVSYHRWVGARNMF TASSFQDGTDCSCSQKYILQEDIVRIHMEPRAPVMEAAGSLDTAAVNFMLSFVYILCGCNGIMTHTAISYFRYVVMXSIL DIGANRRLERIRNRTVQCFV |
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