Gene
| Gene Model ID | pfu_aug1.0_41530.1_70414 |
|---|---|
| Locus | scaffold41530.1 : 1252 ... 5016 : - |
| To GenomeBrowser | scaffold41530.1:1252..5016 |
| Genes list of scaffold | scaffold41530.1 |
| Synonym | pfu_aug2.0_645.1_17679 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_41530.1_70414.t1 | 2 | 1 | Gly_transf_sug | 57 | 68 | 1.8e-11 | 44.3 | 0.15 | 440.0 | 1.3 |
| pfu_aug1.0_41530.1_70414.t1 | 2 | 2 | Gly_transf_sug | 262 | 300 | 1.8e-11 | 44.3 | 7.3e-14 | 2.2e-10 | 40.8 |
| pfu_aug1.0_41530.1_70414.t1 | 1 | 1 | Caps_synth | 266 | 348 | 3.1e-07 | 29.8 | 2.0e-10 | 6.0e-07 | 28.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_41530.1_70414.t1 | gi|260830709|ref|XP_002610303.1| | hypothetical protein BRAFLDRAFT_93039 [Branchiostoma floridae] | 6.0e-37 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_41530.1_70414.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_41530.1_70414.t1 atgcgacccgacataatagagtttcactgtaagtataacataagtgaagacgatccatatgatatgtggctgaaggaaat caaaatgaaaatatctggatttgtcgtaaaaagaattccggaaaattggaaatttcaacaatatagagactgcggaattt attatggaatcgcggtgctccacgacagaggagggatttacgtgtcagacaatgttacattcactgaatctgtcagaagc tatcgtaggaaaaatttcacagttgggttagattctcgcggtgacgtcagctttgtgatgtcatcaagaagaaattacta tctgcggaaactagctgagattaattcaaaacataacataccatttgattcgttcaaactgaccattcgttgcagcgtga taagtccaaataagttgcaggtttataatcaggaaaattcatgctttgtgttaaacaatattcaccctatagatatcatg tatttgaattcaacaatcggagtaatagcgagaaaacttacttatggaagcccagacgcaatcagacacaaaccgttact accaggaaaaataccaagatatgtgcatttagtatggtaccacgaaaagaacatgacattcccgatgtacctaagtatta gaagcgctttagtcattctaaatccagagaaagtattcattcatggggacaagaaattaaagggagactacttcgataaa ataatgaaagatccaagagttattttagtaaatcgtgaaatcccgcaatatatctttggtcataagctgcattatacaac acacttgagtgacgtcatccgacttgacgtgttattgaaatatggtggtatttatatggattgggatgtaatttgggcga aaccggtggatgatctcatatcaaccggatatgacgcaatcgtgaatttcgattgtcttagaaggcacaattatcctcat tacatcaacaatggagttttaatggcaaaacgaaattctcattttatacagttttggcatgattcgctcagaaactacag atccagagcttattttcacaattcattagaactgccgtataaaacttacgagaaatatcctcatactgtctatattgaga gacatttacaggtcatctgttatttaatgaagtgtcatcctacttggaaaagtcaataccaaagcaaacgcaaagatctg tcatttgattggcggacggaagcctatgctgttcattttactcatcctgaccccccggatttcgcaaatgagagttcact tctgaacggaaaaggcagattcgctgaactaggaagatatgtaatgaacaaatcaaattaa |
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Protein
| Protein ID | pfu_aug1.0_41530.1_70414.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_41530.1_70414.t1 MRPDIIEFHCKYNISEDDPYDMWLKEIKMKISGFVVKRIPENWKFQQYRDCGIYYGIAVLHDRGGIYVSDNVTFTESVRS YRRKNFTVGLDSRGDVSFVMSSRRNYYLRKLAEINSKHNIPFDSFKLTIRCSVISPNKLQVYNQENSCFVLNNIHPIDIM YLNSTIGVIARKLTYGSPDAIRHKPLLPGKIPRYVHLVWYHEKNMTFPMYLSIRSALVILNPEKVFIHGDKKLKGDYFDK IMKDPRVILVNREIPQYIFGHKLHYTTHLSDVIRLDVLLKYGGIYMDWDVIWAKPVDDLISTGYDAIVNFDCLRRHNYPH YINNGVLMAKRNSHFIQFWHDSLRNYRSRAYFHNSLELPYKTYEKYPHTVYIERHLQVICYLMKCHPTWKSQYQSKRKDL SFDWRTEAYAVHFTHPDPPDFANESSLLNGKGRFAELGRYVMNKSN |
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