Gene
| Gene Model ID | pfu_aug1.0_4158.1_30606 |
|---|---|
| Locus | scaffold4158.1 : 1886 ... 10671 : + |
| To GenomeBrowser | scaffold4158.1:1886..10671 |
| Genes list of scaffold | scaffold4158.1 |
| Synonym | pfu_aug2.0_3370.1_02393 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to MgC1q53. 125 bits, 7e-27 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4158.1_30606.t1 | 1 | 1 | C1q | 136 | 256 | 9.3e-19 | 67.6 | 5.1e-22 | 1.9e-18 | 66.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_4158.1_30606.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4158.1_30606.t1 atgaagacaatttctcttcttcacctctgttctatctatattgtgcacgttttctgtgacactggaagtgataactactc accagtaccaaaatttgatattcaaaaagaactacaagatatacgaaatcagttatatcatgaaacaacgattagacttc agtttgataaggaattgtccgccatggcgagacgatatcgaactctgagtttcgaacaaacaaacacaaaaatggaaaat gtggaattaaagaggcagataagtgctatgtcgcaatccttgacggagaccgtcaacatggatgaatgggaaaagttaaa tgatacagttgcttcgcttcgatctattgtaagggaacagaacgatacgataatgtttctcaaaggatgtaatagttcag tggtggcattcaccgccattctcagccatgacgtcaaacttggccagaaatccagagtaatttacgacagaatcttgacc aacattggaaaaggatacaataatttgactgggattttcacagcacctgccagtggcctttactccgtgtcagtatcgat gatggcacgtcccagcgacagcattcatcttaatctcgtcaaagacgacatagagcttgtacgtctatggactcagtctg gacgatgggaactttcatcgcacacaatcaatattcctctgaagcgagatgaccagttgtgggtgaggcaatattcagga atcaatctctacggaggggaaaattacaacgttttcactgccatccttttgagagaaggtgatttcacccagcagtga |
|
Protein
| Protein ID | pfu_aug1.0_4158.1_30606.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4158.1_30606.t1 MKTISLLHLCSIYIVHVFCDTGSDNYSPVPKFDIQKELQDIRNQLYHETTIRLQFDKELSAMARRYRTLSFEQTNTKMEN VELKRQISAMSQSLTETVNMDEWEKLNDTVASLRSIVREQNDTIMFLKGCNSSVVAFTAILSHDVKLGQKSRVIYDRILT NIGKGYNNLTGIFTAPASGLYSVSVSMMARPSDSIHLNLVKDDIELVRLWTQSGRWELSSHTINIPLKRDDQLWVRQYSG INLYGGENYNVFTAILLREGDFTQQ |
|