Gene
Gene Model ID | pfu_aug1.0_4158.1_30606 |
---|---|
Locus | scaffold4158.1 : 1886 ... 10671 : + |
To GenomeBrowser | scaffold4158.1:1886..10671 |
Genes list of scaffold | scaffold4158.1 |
Synonym | pfu_aug2.0_3370.1_02393 |
Manual annotation
Study field | Reproduction |
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Gene name | C1q domain containing protein |
Description | Best hit to MgC1q53. 125 bits, 7e-27 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4158.1_30606.t1 | 1 | 1 | C1q | 136 | 256 | 9.3e-19 | 67.6 | 5.1e-22 | 1.9e-18 | 66.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
adductorMuscle | 2 |
Transcript
Transcript ID | pfu_aug1.0_4158.1_30606.t1 |
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Definition | - |
>pfu_aug1.0_4158.1_30606.t1 atgaagacaatttctcttcttcacctctgttctatctatattgtgcacgttttctgtgacactggaagtgataactactc accagtaccaaaatttgatattcaaaaagaactacaagatatacgaaatcagttatatcatgaaacaacgattagacttc agtttgataaggaattgtccgccatggcgagacgatatcgaactctgagtttcgaacaaacaaacacaaaaatggaaaat gtggaattaaagaggcagataagtgctatgtcgcaatccttgacggagaccgtcaacatggatgaatgggaaaagttaaa tgatacagttgcttcgcttcgatctattgtaagggaacagaacgatacgataatgtttctcaaaggatgtaatagttcag tggtggcattcaccgccattctcagccatgacgtcaaacttggccagaaatccagagtaatttacgacagaatcttgacc aacattggaaaaggatacaataatttgactgggattttcacagcacctgccagtggcctttactccgtgtcagtatcgat gatggcacgtcccagcgacagcattcatcttaatctcgtcaaagacgacatagagcttgtacgtctatggactcagtctg gacgatgggaactttcatcgcacacaatcaatattcctctgaagcgagatgaccagttgtgggtgaggcaatattcagga atcaatctctacggaggggaaaattacaacgttttcactgccatccttttgagagaaggtgatttcacccagcagtga |
Protein
Protein ID | pfu_aug1.0_4158.1_30606.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4158.1_30606.t1 MKTISLLHLCSIYIVHVFCDTGSDNYSPVPKFDIQKELQDIRNQLYHETTIRLQFDKELSAMARRYRTLSFEQTNTKMEN VELKRQISAMSQSLTETVNMDEWEKLNDTVASLRSIVREQNDTIMFLKGCNSSVVAFTAILSHDVKLGQKSRVIYDRILT NIGKGYNNLTGIFTAPASGLYSVSVSMMARPSDSIHLNLVKDDIELVRLWTQSGRWELSSHTINIPLKRDDQLWVRQYSG INLYGGENYNVFTAILLREGDFTQQ |