Gene
Gene Model ID | pfu_aug1.0_4158.1_30607 |
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Locus | scaffold4158.1 : 21222 ... 40485 : - |
To GenomeBrowser | scaffold4158.1:21222..40485 |
Genes list of scaffold | scaffold4158.1 |
Synonym | pfu_aug2.0_31.1_03471 |
Manual annotation
Study field | Reproduction |
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Gene name | C1q domain containing protein |
Description | Best hit to MgC1q53. 128 bits, 1e-27 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4158.1_30607.t1 | 1 | 1 | C1q | 127 | 247 | 1.5e-22 | 79.9 | 1.5e-26 | 2.2e-22 | 79.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
mantle | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_4158.1_30607.t1 |
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Definition | - |
>pfu_aug1.0_4158.1_30607.t1 atgctcgatttaatgctctattgcacacgagagcgccgcgaatgcaacaagaatatgctacgcgtccgctacgatagtga ggcgattgtgataagaatagagaagaatgcgacacgaatgtgccacgataaaaagacactgaggcgaatgagaggcgaat gcaggagattgagacacgactttaacccgatagaacacaatcataaaagagccattatcatcatgctgttgatatctttg gtgataattgataaatcagccaaaattcagggaaagaaatcaaatgacttccatccgttacaagaaataaagaggttttg caacaagttcggctttgataagaaatgttatgacgtcagtttgattcgacctgtagttgcattcaccgccatacttactc atacagtaacgctcggtgataaatcagcagtaatatataacaaagtcttgaccaacatagggaatggatataacgcacac actggtcatttcacagtaccagtaagcggtctctactccatatcagcgtctatgatgggagatccttcaaattccattca tttgaaccttgtcaggaatggtaaagagcttgtacgcttgtatacacagggcggaaggcatacagtagcatcgcatacta tcaatgtaccgttgaagaaaggagatcacctttgggttcaacaaaggctgagatctggaaagaagctctatagctctgga gaaaaattcaatgttttcaccgcaacccttttgaggcatggcaattttgaataa |
Protein
Protein ID | pfu_aug1.0_4158.1_30607.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4158.1_30607.t1 MLDLMLYCTRERRECNKNMLRVRYDSEAIVIRIEKNATRMCHDKKTLRRMRGECRRLRHDFNPIEHNHKRAIIIMLLISL VIIDKSAKIQGKKSNDFHPLQEIKRFCNKFGFDKKCYDVSLIRPVVAFTAILTHTVTLGDKSAVIYNKVLTNIGNGYNAH TGHFTVPVSGLYSISASMMGDPSNSIHLNLVRNGKELVRLYTQGGRHTVASHTINVPLKKGDHLWVQQRLRSGKKLYSSG EKFNVFTATLLRHGNFE |