Gene
| Gene Model ID | pfu_aug1.0_4158.1_30607 |
|---|---|
| Locus | scaffold4158.1 : 21222 ... 40485 : - |
| To GenomeBrowser | scaffold4158.1:21222..40485 |
| Genes list of scaffold | scaffold4158.1 |
| Synonym | pfu_aug2.0_31.1_03471 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to MgC1q53. 128 bits, 1e-27 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4158.1_30607.t1 | 1 | 1 | C1q | 127 | 247 | 1.5e-22 | 79.9 | 1.5e-26 | 2.2e-22 | 79.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4158.1_30607.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4158.1_30607.t1 atgctcgatttaatgctctattgcacacgagagcgccgcgaatgcaacaagaatatgctacgcgtccgctacgatagtga ggcgattgtgataagaatagagaagaatgcgacacgaatgtgccacgataaaaagacactgaggcgaatgagaggcgaat gcaggagattgagacacgactttaacccgatagaacacaatcataaaagagccattatcatcatgctgttgatatctttg gtgataattgataaatcagccaaaattcagggaaagaaatcaaatgacttccatccgttacaagaaataaagaggttttg caacaagttcggctttgataagaaatgttatgacgtcagtttgattcgacctgtagttgcattcaccgccatacttactc atacagtaacgctcggtgataaatcagcagtaatatataacaaagtcttgaccaacatagggaatggatataacgcacac actggtcatttcacagtaccagtaagcggtctctactccatatcagcgtctatgatgggagatccttcaaattccattca tttgaaccttgtcaggaatggtaaagagcttgtacgcttgtatacacagggcggaaggcatacagtagcatcgcatacta tcaatgtaccgttgaagaaaggagatcacctttgggttcaacaaaggctgagatctggaaagaagctctatagctctgga gaaaaattcaatgttttcaccgcaacccttttgaggcatggcaattttgaataa |
|
Protein
| Protein ID | pfu_aug1.0_4158.1_30607.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4158.1_30607.t1 MLDLMLYCTRERRECNKNMLRVRYDSEAIVIRIEKNATRMCHDKKTLRRMRGECRRLRHDFNPIEHNHKRAIIIMLLISL VIIDKSAKIQGKKSNDFHPLQEIKRFCNKFGFDKKCYDVSLIRPVVAFTAILTHTVTLGDKSAVIYNKVLTNIGNGYNAH TGHFTVPVSGLYSISASMMGDPSNSIHLNLVRNGKELVRLYTQGGRHTVASHTINVPLKKGDHLWVQQRLRSGKKLYSSG EKFNVFTATLLRHGNFE |
|