Gene
| Gene Model ID | pfu_aug1.0_4162.1_66900 |
|---|---|
| Locus | scaffold4162.1 : 19880 ... 31665 : - |
| To GenomeBrowser | scaffold4162.1:19880..31665 |
| Genes list of scaffold | scaffold4162.1 |
| Synonym | pfu_aug2.0_1524.1_15082 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-AP4 |
| Description | Best hit to CAA40683 transcription factor AP-4 [Homo sapiens] with 2e-45 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4162.1_66900.t1 | 3 | 1 | HLH | 27 | 78 | 1.4e-16 | 59.9 | 1.8e-20 | 1.4e-16 | 59.9 |
| pfu_aug1.0_4162.1_66900.t1 | 3 | 2 | HLH | 149 | 157 | 1.4e-16 | 59.9 | 0.93 | 6900.0 | -3.2 |
| pfu_aug1.0_4162.1_66900.t1 | 3 | 3 | HLH | 225 | 236 | 1.4e-16 | 59.9 | 0.66 | 4900.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4162.1_66900.t1 | gi|354488493|ref|XP_003506403.1| | PREDICTED: transcription factor AP-4 [Cricetulus griseus] | 1.0e-38 |
Transcript
| Transcript ID | pfu_aug1.0_4162.1_66900.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4162.1_66900.t1 atgcaacaagaagatttatcagctgttttcgagagacacacatccatgccgacccatgttgaacaagagaagaaggtccg tagggagatagctaacagtaacgagaggagaaggatgcagagtataaatgctggattccaatctctcaagaacctgatcc ctcaccaggaaggagaaaaactcagcaaggctgccatacttcagcagacagcttcatatatccatcagctggagaaggag aagacacgacttctgacacacaataatgaacttagcatgcaactgaagcatctccttggtaacaacctcgactcgtactc acctccaacaaaacggaagaaacgtgacacaggtaacaaagaatcctctgatgaaggtattactgccgactatgatgatg tcaacgagatcaagagagaaatgattgaactgcgctgccagctagaaagggaaagacaactgcgtatgcgtttggaaggg caaactgaggcttatgactctcaggtttaccatatccaaaaatcaccagagccaaaacagtatgcatccaatatgcaagc ccagatggagaaagataaaattatctacatggagcaaataaagaaagaagaagaggaagaaaaattaagaaatgattcga gttcggagacagaatcaatgtcccgacgaaatctggaaacgatagtggaagccatacgtcatttagaaggagacagactg gaagaaggaaatcatcatagctccatagtacatagtgaagaaagtgaaaaggaaagtagtgagactgaagacaaccgatc agaactgtctgaccatgattcaccattacaatacatacaagtgatggaggacaatagacaatcaactcttacagagctcc atccctatcaacattcatatcctaacttactacatcatactaacctggtacaatactattgtcgacctaacgttatcgtc caaaaatcatag |
|
Protein
| Protein ID | pfu_aug1.0_4162.1_66900.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4162.1_66900.t1 MQQEDLSAVFERHTSMPTHVEQEKKVRREIANSNERRRMQSINAGFQSLKNLIPHQEGEKLSKAAILQQTASYIHQLEKE KTRLLTHNNELSMQLKHLLGNNLDSYSPPTKRKKRDTGNKESSDEGITADYDDVNEIKREMIELRCQLERERQLRMRLEG QTEAYDSQVYHIQKSPEPKQYASNMQAQMEKDKIIYMEQIKKEEEEEKLRNDSSSETESMSRRNLETIVEAIRHLEGDRL EEGNHHSSIVHSEESEKESSETEDNRSELSDHDSPLQYIQVMEDNRQSTLTELHPYQHSYPNLLHHTNLVQYYCRPNVIV QKS |
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