Gene
Gene Model ID | pfu_aug1.0_4165.1_23515 |
---|---|
Locus | scaffold4165.1 : 10966 ... 27587 : + |
To GenomeBrowser | scaffold4165.1:10966..27587 |
Genes list of scaffold | scaffold4165.1 |
Synonym | NA |
Manual annotation
Study field | Transcription Factors |
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Gene name | Pfu-Hif/Sim/Trh-related |
Description | Best hit to AAY14704 endothelial PAS domain protein 1 [Homo sapiens] [Homo sapiens] with 4e-04 by a BLASTP search against NCBI Homo sapiens nr database. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4165.1_23515.t1 | 1 | 1 | HIF-1 | 80 | 105 | 6.3e-06 | 25.2 | 9.0e-10 | 1.3e-05 | 24.2 |
Transcript
Transcript ID | pfu_aug1.0_4165.1_23515.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4165.1_23515.t1 atgatgccgacaaagacgatgaagcaggagccagacatgttccccaagtcactatgtagaaatggtgcctttaatcagat gggtagtaatcctaacctactttcaccacactcagtttcgccagctatactttcgccagtcagcagtccggctgactatc agacgatggtggatccatcagacatgtcacaggatatggcccagttattgacctctatggaaacctccaatatgttgaat gaagacaatgaggttgaccttgacactagggctccatacatacccatgaacgtggaggcagattttagcctcgtggcacc aacaacagatgccctgttcagcttgaacagtgactttgacccaggcacatttggaggaacagagaaagtgttcacctcca gagacaaaatcctacctgaccctccaaaagaacagcgtatgacgttaagggacatgttaggggagagcactgtggtagct gccatagaacagatccctgagactcgtctgatgcagatgaaacgtccactagacatgaacagcctagagaaggggccacc tatcaaacgtatgaagggcatggtggacaatgggcagaaacgtagaggtattgtgtga |
Protein
Protein ID | pfu_aug1.0_4165.1_23515.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4165.1_23515.t1 MMPTKTMKQEPDMFPKSLCRNGAFNQMGSNPNLLSPHSVSPAILSPVSSPADYQTMVDPSDMSQDMAQLLTSMETSNMLN EDNEVDLDTRAPYIPMNVEADFSLVAPTTDALFSLNSDFDPGTFGGTEKVFTSRDKILPDPPKEQRMTLRDMLGESTVVA AIEQIPETRLMQMKRPLDMNSLEKGPPIKRMKGMVDNGQKRRGIV |