Gene
| Gene Model ID | pfu_aug1.0_4165.1_23515 |
|---|---|
| Locus | scaffold4165.1 : 10966 ... 27587 : + |
| To GenomeBrowser | scaffold4165.1:10966..27587 |
| Genes list of scaffold | scaffold4165.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Hif/Sim/Trh-related |
| Description | Best hit to AAY14704 endothelial PAS domain protein 1 [Homo sapiens] [Homo sapiens] with 4e-04 by a BLASTP search against NCBI Homo sapiens nr database. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4165.1_23515.t1 | 1 | 1 | HIF-1 | 80 | 105 | 6.3e-06 | 25.2 | 9.0e-10 | 1.3e-05 | 24.2 |
Transcript
| Transcript ID | pfu_aug1.0_4165.1_23515.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4165.1_23515.t1 atgatgccgacaaagacgatgaagcaggagccagacatgttccccaagtcactatgtagaaatggtgcctttaatcagat gggtagtaatcctaacctactttcaccacactcagtttcgccagctatactttcgccagtcagcagtccggctgactatc agacgatggtggatccatcagacatgtcacaggatatggcccagttattgacctctatggaaacctccaatatgttgaat gaagacaatgaggttgaccttgacactagggctccatacatacccatgaacgtggaggcagattttagcctcgtggcacc aacaacagatgccctgttcagcttgaacagtgactttgacccaggcacatttggaggaacagagaaagtgttcacctcca gagacaaaatcctacctgaccctccaaaagaacagcgtatgacgttaagggacatgttaggggagagcactgtggtagct gccatagaacagatccctgagactcgtctgatgcagatgaaacgtccactagacatgaacagcctagagaaggggccacc tatcaaacgtatgaagggcatggtggacaatgggcagaaacgtagaggtattgtgtga |
|
Protein
| Protein ID | pfu_aug1.0_4165.1_23515.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4165.1_23515.t1 MMPTKTMKQEPDMFPKSLCRNGAFNQMGSNPNLLSPHSVSPAILSPVSSPADYQTMVDPSDMSQDMAQLLTSMETSNMLN EDNEVDLDTRAPYIPMNVEADFSLVAPTTDALFSLNSDFDPGTFGGTEKVFTSRDKILPDPPKEQRMTLRDMLGESTVVA AIEQIPETRLMQMKRPLDMNSLEKGPPIKRMKGMVDNGQKRRGIV |
|