Gene
| Gene Model ID | pfu_aug1.0_41741.1_34213 |
|---|---|
| Locus | scaffold41741.1 : 1 ... 17434 : - |
| To GenomeBrowser | scaffold41741.1:1..17434 |
| Genes list of scaffold | scaffold41741.1 |
| Synonym | pfu_aug2.0_15.1_16698 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_41741.1_34213.t1 | 2 | 1 | FANCI_S3 | 45 | 198 | 3.0e-23 | 82.3 | 6.0e-27 | 3.0e-23 | 82.3 |
| pfu_aug1.0_41741.1_34213.t1 | 1 | 1 | FANCI_S4 | 186 | 318 | 2.90069e-42 | 144.5 | 0.0 | 2.90069e-42 | 144.5 |
| pfu_aug1.0_41741.1_34213.t1 | 2 | 2 | FANCI_S3 | 256 | 256 | 3.0e-23 | 82.3 | 0.25 | 1200.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_41741.1_34213.t1 | gi|260817539|ref|XP_002603643.1| | hypothetical protein BRAFLDRAFT_128673 [Branchiostoma floridae] | 7.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_41741.1_34213.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_41741.1_34213.t1 tgaatcaagcctgactgagattatccagttgtatgagaatcataaaaagctgactgatatactgagagagaaagtcagca gtgctgccggcaaaaaaggtgggaaaatatcaactggtaaaacaccacatagtctgctgtctgtaggatgtgtggtctcc atggtagaaactgtactgggagatacagctccgagtaacagggaaacagtatccatcctacaggagaattctgatttcaa gaaatacttgatgggtgtggcattacagaagctacagcagattcaggataagggggcgtgtgatggggcggagggtagtg ataaaaataaactactcaagcacctacggtctctgggaagggtccttctgcagttttatgcagagaatcagaaatctagc gagggaaggaagaataaatgtaagataatatacagtcagtgtctggacggcttggtggtcatacttaatataataactca cagataccctgatcatctcacacacagccttagtcaaatggctgaatccagtaaaacagatgaccaagaaattatgcttt cacacatcaagaaataccagtatttacatctgtaccaacagagggcaggtcatctatcatctcgttttgagaagctggtc aaattaatcggtacacatctcacacaatatgtgtatgccatgattacctacattcagcaagcggagagtgaccaggtaca gcagaacgttgataaaggcaaaaaagataaaaagaagcaaactgctgcactgcaagctggaagggcaaaagtgatgaagg agtctaaaacaataccaaatttgatctttgcagtagaaacactagaaaaattcctcattcagctctcaaagaagtcaaag gtaaacttgatggaacatatgaagttgagtacttctcgtgatttccgtatcaacatccaagccgttcagacggcaatgga agaggattctgatgaagcttcagatgatagtgacgatgatacaacacaacagaaccaagatgataagctcactgttatat taatattt |
|
Protein
| Protein ID | pfu_aug1.0_41741.1_34213.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_41741.1_34213.t1 ESSLTEIIQLYENHKKLTDILREKVSSAAGKKGGKISTGKTPHSLLSVGCVVSMVETVLGDTAPSNRETVSILQENSDFK KYLMGVALQKLQQIQDKGACDGAEGSDKNKLLKHLRSLGRVLLQFYAENQKSSEGRKNKCKIIYSQCLDGLVVILNIITH RYPDHLTHSLSQMAESSKTDDQEIMLSHIKKYQYLHLYQQRAGHLSSRFEKLVKLIGTHLTQYVYAMITYIQQAESDQVQ QNVDKGKKDKKKQTAALQAGRAKVMKESKTIPNLIFAVETLEKFLIQLSKKSKVNLMEHMKLSTSRDFRINIQAVQTAME EDSDEASDDSDDDTTQQNQDDKLTVILIF |
|