Gene
| Gene Model ID | pfu_aug1.0_419.1_58108 |
|---|---|
| Locus | scaffold419.1 : 14158 ... 30465 : - |
| To GenomeBrowser | scaffold419.1:14158..30465 |
| Genes list of scaffold | scaffold419.1 |
| Synonym | pfu_aug2.0_253.1_10505 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_419.1_58108.t1 | 6 | 1 | WD40 | 120 | 141 | 3.6e-32 | 109.0 | 0.0036 | 27.0 | 4.8 |
| pfu_aug1.0_419.1_58108.t1 | 6 | 2 | WD40 | 159 | 190 | 3.6e-32 | 109.0 | 1.3e-10 | 9.5e-07 | 28.4 |
| pfu_aug1.0_419.1_58108.t1 | 6 | 3 | WD40 | 194 | 230 | 3.6e-32 | 109.0 | 1.4e-09 | 1.1e-05 | 25.1 |
| pfu_aug1.0_419.1_58108.t1 | 6 | 4 | WD40 | 234 | 269 | 3.6e-32 | 109.0 | 7.7e-08 | 0.00057 | 19.6 |
| pfu_aug1.0_419.1_58108.t1 | 6 | 5 | WD40 | 275 | 309 | 3.6e-32 | 109.0 | 2.0e-07 | 0.0015 | 18.3 |
| pfu_aug1.0_419.1_58108.t1 | 6 | 6 | WD40 | 323 | 350 | 3.6e-32 | 109.0 | 3.3e-07 | 0.0025 | 17.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_419.1_58108.t1 | gi|115889689|ref|XP_794564.2| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 6 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_419.1_58108.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_419.1_58108.t1 atggtggaagtctgtaacaacttcaacaacaacatgtctgtgctcagtagtggagtcttgctgaactctcttgtgccgga acactcaccactggcaaatggaaagatgaaacatcctgggtcagacgtggaagtgttcgagttcaatatcggaaaagctc aaagtctgagatgtgtcagctcagacagggctacaacatgcggaaaatgtgaaagttgtgtattaacgaggcagctcaaa gagattcgggggcatatagtttttggcctgtccatctgtttgtctgtctgtctgtttgtctgtttgtccgtactgaaaac tttaacattgggcataacttttgaatgagtggatcctcatagagtcattcacacaggaggtggagatcttatagctatag gatcaaaggatcgtaaagttcgcttcacttccatcgagcctgacaaggtcgacacacccatgccaaacccgattacaggt catgctgggagtatacggtgctgtcatatactggaggaacaaaggctcatcatcagcggcagctatgatactagtattag gatgtgggatatagatacaggatcctgtaaacggatatttcgaggtcatcgtgacacgattcttacaattactgttgttg gtgattatttagggtcaggagctaaagataattcatgcaaagtttttaatctgcacacgggaaagtgtcatagaacattc cgacatcgagctccagtatgggcggtggccatgagtaaggaagtctgtatatctggatgtgaacagggcaaggtcaaagt gtgggacctcaaatctggagatcttataaaggtgctaaatcgtcatcatggtcagataacgtctattaagtttgatcgct ggcacatcatcaccggcagtacggatggttacgccctcgtgtggagctctcagggagatcacgacagatgtcttaacgca ctacgtcatccaaagcctgtattatgtttagagtttatgtatctccgtgtgataactgggtcacaggacggacgtattag gatatggaacatggtcaacagtcagtgctgtcgtataatgaggggaaacagtcagagcacccctatcagatcaattatag cccttggtgatagaattaccctaaacacagacataaatcttctagtgctaaactttgagccagtagagtgggactacacg ttagaaaacgacaaaataccatcatttgtgaagtatgggtgttatgccgacgctccaatcagacctcagccttaccccta catacgtgctcagagaatgaaacgtgctggagcgacaaataccaaaatcgttcatcacaacaaagttatagagacattaa gtgaaccacgtacacctctacagactcagtacagagctgcacagctaccacatagtgctaaaagtctaagcttgaaaagc atggagaatgctcgctttatacagagtgcagggcctgagtcaggttatgaaagcggcccttctcctcgtgctctcccgga gtccagacctacatcagagaggtggactgtatcgtcacagaaatcaaaacattcctccatcgctaaaccaccacttccaa aaccaaagccaactacacccaaaactatacccactcacgttaatgtcatgatcactgatccaaaacagaaagaatacgat gatgatgaagatgatgagggaactccacccaccatcatgaaacgacgtgtatcgtgggcgtttgacactccatatgttcc caagtcaaaagaaatatctctgtcagaaacgaaagccgtactcagatctcaaatgagaatgaaagccgaaaaccaagtgc ctcctgactttatatatttgactataaatgcaatacagaattcaatgacatcatcagaaaccatccataacacagagaaa aacatgaaattgttagctgcaagatttgacggactgaccaagagaccttcatcctcacccagcaaaatcgatccaagaac caggatacctgtagaagaaatgtcgctagataagttacggccaaaacaagatgatgttgaaactgtatcagaggtgtctg ataataaatctgtaaaatctatgaagtccactaaaaccacaaaatcaatgatgtcgcacggtccagatagagaactatac gccactccatgtgaagttaaaccaaccaaaacaaagattagaatgagtctacatccaaagagaattaagacaacggtgcc gtcaggacgctctatacgaccgctttctgcctctgtgtcacggagacaaccaccaccagatcccgaggaaaatataggta gacctgtaacggcaccatcgctacggcggccagacacggcgatatcctcggtaccatccactatagctacagttatgcca ggattagtgccccagcagaagaggcaaccagacagactaacaacctctggttatgaatctaaccttgtacctatgaagat gtaccctaaagacatgaaagagaaactcagtgcacttatagagtcaaaaagacggacaaagtcagagaccatattacggt cagccagtgacacggcaattggtaaagttagtaaatataatgacccaatgcgtagtcatgtcaaatttgaattaagaaca tacgaacaagaacaggatcatataaagaatgtagaacatcagtaccagaagaggctacaggaggaagatgtaatgctaga gaaaaagaaaagagcagcatggttagccaaggtcaaagttcgacctaccacggtacacggtgagaaacccgatagttga |
|
Protein
| Protein ID | pfu_aug1.0_419.1_58108.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_419.1_58108.t1 MVEVCNNFNNNMSVLSSGVLLNSLVPEHSPLANGKMKHPGSDVEVFEFNIGKAQSLRCVSSDRATTCGKCESCVLTRQLK EIRGHIVFGLSICLSVCLFVCLSVLKTLTLGITFEXVDPHRVIHTGGGDLIAIGSKDRKVRFTSIEPDKVDTPMPNPITG HAGSIRCCHILEEQRLIISGSYDTSIRMWDIDTGSCKRIFRGHRDTILTITVVGDYLGSGAKDNSCKVFNLHTGKCHRTF RHRAPVWAVAMSKEVCISGCEQGKVKVWDLKSGDLIKVLNRHHGQITSIKFDRWHIITGSTDGYALVWSSQGDHDRCLNA LRHPKPVLCLEFMYLRVITGSQDGRIRIWNMVNSQCCRIMRGNSQSTPIRSIIALGDRITLNTDINLLVLNFEPVEWDYT LENDKIPSFVKYGCYADAPIRPQPYPYIRAQRMKRAGATNTKIVHHNKVIETLSEPRTPLQTQYRAAQLPHSAKSLSLKS MENARFIQSAGPESGYESGPSPRALPESRPTSERWTVSSQKSKHSSIAKPPLPKPKPTTPKTIPTHVNVMITDPKQKEYD DDEDDEGTPPTIMKRRVSWAFDTPYVPKSKEISLSETKAVLRSQMRMKAENQVPPDFIYLTINAIQNSMTSSETIHNTEK NMKLLAARFDGLTKRPSSSPSKIDPRTRIPVEEMSLDKLRPKQDDVETVSEVSDNKSVKSMKSTKTTKSMMSHGPDRELY ATPCEVKPTKTKIRMSLHPKRIKTTVPSGRSIRPLSASVSRRQPPPDPEENIGRPVTAPSLRRPDTAISSVPSTIATVMP GLVPQQKRQPDRLTTSGYESNLVPMKMYPKDMKEKLSALIESKRRTKSETILRSASDTAIGKVSKYNDPMRSHVKFELRT YEQEQDHIKNVEHQYQKRLQEEDVMLEKKKRAAWLAKVKVRPTTVHGEKPDS |
|