Gene
| Gene Model ID | pfu_aug1.0_4200.1_59458 |
|---|---|
| Locus | scaffold4200.1 : 16310 ... 26315 : - |
| To GenomeBrowser | scaffold4200.1:16310..26315 |
| Genes list of scaffold | scaffold4200.1 |
| Synonym | pfu_aug2.0_1527.1_24971 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4200.1_59458.t1 | 3 | 1 | Menin | 3 | 308 | 0.0 | 488.4 | 0.0 | 0.0 | 441.4 |
| pfu_aug1.0_4200.1_59458.t1 | 3 | 2 | Menin | 329 | 350 | 0.0 | 488.4 | 0.34 | 2500.0 | -3.8 |
| pfu_aug1.0_4200.1_59458.t1 | 3 | 3 | Menin | 485 | 588 | 0.0 | 488.4 | 1.2e-17 | 9.3e-14 | 50.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4200.1_59458.t1 | gi|260791738|ref|XP_002590885.1| | hypothetical protein BRAFLDRAFT_240022 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_4200.1_59458.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4200.1_59458.t1 atggcgggattccgcgatcgggaaaaacagtttttcccacttcaaaatattggagatgttgtgaagttgttcaaggatca actgatcagtgatgaagaacctaatttacccttgttgtcaattgtcttgggagttatcgaaaacatactgacagtgcaca gggcggccccaacagaagttgacagttcaaaaattttggaaccgattttccccgtcatagaattggaaacagttgaagct ttacattcaaaatttgtggctttgattaagaaatctgtggatttgacaaagtttcctcaaggttatgccaccagagaatt ggtgaaatttgtgtcggatgttatttggtgttctctgacgcgggcctattacaaggacaaggcccatctacaatcgttgt acagtttcctaacggggaataagttggactgttttggtgtggcatttgcagtagtagcggcgtttcaggtgttggaatat aaagatgtccacttggcattatcagaggaccatgcatgggtggtatttggtgaggatcaacgagagactgccgaggtcac gtggcatggtaaaggtaatgaggataagagaggacagcctatcactgagggtgtagcagataagagctggttgtacctaa acggacagccagtgatttgtactcgccagatggaggtggcttctatcgtcagcggtataaacccgtcaataactctgtcc acagatagcgtagaactagcagcactccaacaggagttgctttggttgctgcatgatatgggccacctagacaagtaccc catggcactgggaaatcttggtgatttagaggaaatctcacatactcctgagaaacctccggcagtgaggctgtttgaag aagctatagaatcgaccaagaagcattacaacaaccagcatgtgggggacattaatctgaaaggagaaaatggtgaggaa gaagaaagtggggaaagtgaatctgatagtgacagtgaaactgaaaataaagacaaaaatcaaaatgtgacagatcggaa agatgtgaacaaaatcgaggaagacttgtcaacaaagagtagcgcgcgaggcattagggggagaaaacagggtcgtaggg tcggtggacatactaaaaggtcaaaggaggaagattcaacagaggtcaatggagattcaaaagaggaagaattaaagagt gtgatagaggaactggaaagcaaagtagaggaaagtagtgaaaaagagcccattaatcctagtatatcagatctggctaa agcttgtggtgaaggcattttgaacccagattatctactgggtggagagggtccgtttaccacggctaacaccacgatga ctgtaagtacatctacaacagactctcgtgtagattaccaggaatttttgagttctaagtcgaatggatcaccttttatg ggaatgactgtagactctatgttaaaggcagagagcccgtctgacatggttatgtatagaaaacgaccaagttcaacgcg cacgcctacacctattgtagattccaattctaatgctgaactggctactgacgaaggtactgtaatccctagtcctttac caaagggtcctcctgtattactctgtctcagaagtgaaaaaatgaaaggactgaaaaagattttctcgtcaccgaagctt aacgccaatgcaataaaattacagctgacggcacagtcgcaagtccatttcaagcataataaacgcagcactgactcaga tttagctccactgagaaaacggtcgagaagagaatag |
|
Protein
| Protein ID | pfu_aug1.0_4200.1_59458.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4200.1_59458.t1 MAGFRDREKQFFPLQNIGDVVKLFKDQLISDEEPNLPLLSIVLGVIENILTVHRAAPTEVDSSKILEPIFPVIELETVEA LHSKFVALIKKSVDLTKFPQGYATRELVKFVSDVIWCSLTRAYYKDKAHLQSLYSFLTGNKLDCFGVAFAVVAAFQVLEY KDVHLALSEDHAWVVFGEDQRETAEVTWHGKGNEDKRGQPITEGVADKSWLYLNGQPVICTRQMEVASIVSGINPSITLS TDSVELAALQQELLWLLHDMGHLDKYPMALGNLGDLEEISHTPEKPPAVRLFEEAIESTKKHYNNQHVGDINLKGENGEE EESGESESDSDSETENKDKNQNVTDRKDVNKIEEDLSTKSSARGIRGRKQGRRVGGHTKRSKEEDSTEVNGDSKEEELKS VIEELESKVEESSEKEPINPSISDLAKACGEGILNPDYLLGGEGPFTTANTTMTVSTSTTDSRVDYQEFLSSKSNGSPFM GMTVDSMLKAESPSDMVMYRKRPSSTRTPTPIVDSNSNAELATDEGTVIPSPLPKGPPVLLCLRSEKMKGLKKIFSSPKL NANAIKLQLTAQSQVHFKHNKRSTDSDLAPLRKRSRRE |
|