Gene
| Gene Model ID | pfu_aug1.0_4211.1_66915 |
|---|---|
| Locus | scaffold4211.1 : 27236 ... 34091 : + |
| To GenomeBrowser | scaffold4211.1:27236..34091 |
| Genes list of scaffold | scaffold4211.1 |
| Synonym | pfu_aug2.0_459.1_30787 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4211.1_66915.t1 | 1 | 1 | UPF0020 | 56 | 124 | 9.0e-16 | 57.9 | 4.3e-19 | 1.3e-15 | 57.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4211.1_66915.t1 | gi|313747477|ref|NP_001186418.1| | THUMP domain-containing protein 3 [Xenopus (Silurana) tropicalis] | 9.0e-36 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_4211.1_66915.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4211.1_66915.t1 atgggagcagcttcaaattttgggggtgcagtgaatgagtactttggttggaatgtctccatgaagaactttgacataga agtagttttgaatattgaagaaacagatttgcgtgtttgcctggccttgactaaggagagtatgcacaagagaaatatta tatcttttggaccaacaacacttagaccaacaatagccttctgtctattaagattatgtaagataaaagaaggagatgtg gtgtgtgacccaatgtgtggaactggcagtattcccatacaggcatcccttggctggccaggtagctaccacctgtgtgg agaaatcaacaacaaatcattatccagaacgtctgaaaatatccaacatgtcaatgacttacggaaagaggctgataagt aa |
|
Protein
| Protein ID | pfu_aug1.0_4211.1_66915.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4211.1_66915.t1 MGAASNFGGAVNEYFGWNVSMKNFDIEVVLNIEETDLRVCLALTKESMHKRNIISFGPTTLRPTIAFCLLRLCKIKEGDV VCDPMCGTGSIPIQASLGWPGSYHLCGEINNKSLSRTSENIQHVNDLRKEADK |
|