Gene
| Gene Model ID | pfu_aug1.0_4229.1_59469 |
|---|---|
| Locus | scaffold4229.1 : 15796 ... 24340 : + |
| To GenomeBrowser | scaffold4229.1:15796..24340 |
| Genes list of scaffold | scaffold4229.1 |
| Synonym | pfu_aug2.0_11.1_03417 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4229.1_59469.t1 | 1 | 1 | Endonuclease_NS | 1 | 129 | 1.6e-27 | 96.5 | 1.6e-31 | 2.3e-27 | 95.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4229.1_59469.t1 | gi|260793836|ref|XP_002591916.1| | hypothetical protein BRAFLDRAFT_236932 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4229.1_59469.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4229.1_59469.t1 atggcggagacgttttacctctctaacatcctgccacagaacctggataataatgccggattctggaacaggtttgaaat ctactgcagaaaactcacggaaaaatatccaaacgtcagaatttacagcggaccactgtttatagccaaacggaatgagg aagacgggaaaaaatatgtgaagtatgaggtgattggtcaaaatgaagttgcagtaccaacacacttgttcaaaatagtc attgtggaaaatgcgaaaaacaatcctgttgccatgggaacattcattgtgcgaaatgaaccaatcagctttcagcatca cttgaaagagtttcaggtacctcttatggatttagaaagacgtgcaggagcaagatttctccccaaaatgaatgtgaatc gagttcaagacttgtgcgaagtagaaacttgtgatttaatgaagaaaacagaatttgacttatactttattggtcgacgt attaacaatgcaacaaacctgaatcaattacaaaaagcttggaacgagttatcacagaaaagcttggagcctgacgagta cataaaacggaaatacaaagaaaaatatgatgaagtatcaaaaaaggaaggtggttaa |
|
Protein
| Protein ID | pfu_aug1.0_4229.1_59469.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4229.1_59469.t1 MAETFYLSNILPQNLDNNAGFWNRFEIYCRKLTEKYPNVRIYSGPLFIAKRNEEDGKKYVKYEVIGQNEVAVPTHLFKIV IVENAKNNPVAMGTFIVRNEPISFQHHLKEFQVPLMDLERRAGARFLPKMNVNRVQDLCEVETCDLMKKTEFDLYFIGRR INNATNLNQLQKAWNELSQKSLEPDEYIKRKYKEKYDEVSKKEGG |
|