Gene
| Gene Model ID | pfu_aug1.0_4230.1_16320 |
|---|---|
| Locus | scaffold4230.1 : 37216 ... 41937 : + |
| To GenomeBrowser | scaffold4230.1:37216..41937 |
| Genes list of scaffold | scaffold4230.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4230.1_16320.t1 | 1 | 1 | Lipocalin_2 | 34 | 179 | 1.9e-15 | 56.8 | 7.1e-19 | 3.5e-15 | 56.0 |
| pfu_aug1.0_4230.1_16320.t1 | 1 | 1 | Lipocalin | 41 | 184 | 2.1e-14 | 53.7 | 5.2e-18 | 2.6e-14 | 53.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4230.1_16320.t1 | gi|55621758|ref|XP_516965.1| | PREDICTED: apolipoprotein D [Pan troglodytes] | 9.0e-30 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_4230.1_16320.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4230.1_16320.t1 atgatttactatattcttttcttgggtgtgattgcgtcggttgacgcccagcgtccacgttgggggacgtgtgaccaatc tatacctgttgtacaaaacttcgacgtaaacaggtacctaggtgtttggtacgaatatgagaggtacttcttcatccctg aaacattcttgaaatgtacccaagccagctactcgttgaacaatgatggatccataaaggttgtcaactctggacagaat ttcattactggtggtcattcccaagcagagggcagggctgtcgctggttcagacccagccaaattggaagtcacgttctc ttcctcgtctcctcccggaccatactgggtacttgacacagactacgattcctacgctgttgtatattcctgtacagata tcataaaaaggtttattcctctaaaagcagagattacttggatactgacgaggtcacgtgatggtatcactggagacgtc aaagaaggaatttataatatgctaagaagtaacagcatcaggccccaggatctcaagtcgacggatcagactggatgtaa cgtataa |
|
Protein
| Protein ID | pfu_aug1.0_4230.1_16320.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4230.1_16320.t1 MIYYILFLGVIASVDAQRPRWGTCDQSIPVVQNFDVNRYLGVWYEYERYFFIPETFLKCTQASYSLNNDGSIKVVNSGQN FITGGHSQAEGRAVAGSDPAKLEVTFSSSSPPGPYWVLDTDYDSYAVVYSCTDIIKRFIPLKAEITWILTRSRDGITGDV KEGIYNMLRSNSIRPQDLKSTDQTGCNV |
|