Gene
| Gene Model ID | pfu_aug1.0_4246.1_01677 |
|---|---|
| Locus | scaffold4246.1 : 26696 ... 32532 : + |
| To GenomeBrowser | scaffold4246.1:26696..32532 |
| Genes list of scaffold | scaffold4246.1 |
| Synonym | pfu_aug2.0_653.1_11041 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4246.1_01677.t1 | 1 | 1 | Radial_spoke_3 | 41 | 326 | 0.0 | 413.5 | 0.0 | 0.0 | 413.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4246.1_01677.t1 | gi|72009354|ref|XP_783727.1| | PREDICTED: radial spoke head protein 3 homolog isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4246.1_01677.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4246.1_01677.t1 atgaccacagtgctatcacagaagcctcagggcacttacacattcgccagtcaaccgagggcggtgccacaaagaaagaa gtacagagacactggactttcacaagaatccggtccccctcaatatggcaacattatgtacgacaggcgaattgtcaggg gtaacacatacgctcaacatacactgccagctcatgcccaacctgatcctattgaaattcaacggcaacaagaaaacaga agacgtgcaatagccagaaaaagggcaaaagaacaactacgacctagatcacccgatcctgttgaaggtagaaaacacat cgatgttcaaactgaattatacttggaggaattaagtgaccgtgtagaggaagctgatgtagaggtacagacggacgctt tccttgacagacctccgtcacccatgtacgtcccagcaaagaccggtgttgacattaccacacagatattagaaggagat ctctttgattttgatgttgaagtcaaaccaattttagaagttttagtcggaaagacagtagaacaagccttattagaagt gatggaggaagaagaattagctaacctcagatcgcaacaaagagcttttgaagaattaagaaatgcggaacttgtagaac aacaaagattagaagaacaagagaggaggcatcgagaagaaaaggagagaaggatgaaacaacagagagaaattgcgaaa aaagaaaaagaaacgtcagataagattgctgcccgagcgtttgcacagagttacttggcagatcttgtacctacagtatt tggcacgctatcagacaatggttacttctatgatcctgttgaaagagatattgaacaaggattcatgccatggttgatgg accaagtacaggaacaattaaagaaatctcaacttggacgattggtgctcgacggtttattacgagaggtggttagtcaa aggatggaagcatactcaaagtttgacgttcaacctcaaagcagatcaacgagtacgaaacctgatgataaggccacaga tagtactaataatgctgtacctccaccggctgcagctacaacgtcagaggtcagtatgacgcaatcatatctgtag |
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Protein
| Protein ID | pfu_aug1.0_4246.1_01677.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4246.1_01677.t1 MTTVLSQKPQGTYTFASQPRAVPQRKKYRDTGLSQESGPPQYGNIMYDRRIVRGNTYAQHTLPAHAQPDPIEIQRQQENR RRAIARKRAKEQLRPRSPDPVEGRKHIDVQTELYLEELSDRVEEADVEVQTDAFLDRPPSPMYVPAKTGVDITTQILEGD LFDFDVEVKPILEVLVGKTVEQALLEVMEEEELANLRSQQRAFEELRNAELVEQQRLEEQERRHREEKERRMKQQREIAK KEKETSDKIAARAFAQSYLADLVPTVFGTLSDNGYFYDPVERDIEQGFMPWLMDQVQEQLKKSQLGRLVLDGLLREVVSQ RMEAYSKFDVQPQSRSTSTKPDDKATDSTNNAVPPPAAATTSEVSMTQSYL |
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