Gene
| Gene Model ID | pfu_aug1.0_4246.1_01680 |
|---|---|
| Locus | scaffold4246.1 : 70174 ... 81085 : - |
| To GenomeBrowser | scaffold4246.1:70174..81085 |
| Genes list of scaffold | scaffold4246.1 |
| Synonym | pfu_aug2.0_653.1_11037 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4246.1_01680.t1 | 1 | 1 | RVT_1 | 375 | 535 | 7.1e-24 | 84.3 | 5.9e-27 | 1.2e-23 | 83.5 |
| pfu_aug1.0_4246.1_01680.t1 | 1 | 1 | rve | 953 | 1065 | 6.3e-24 | 84.3 | 8.2e-27 | 1.7e-23 | 82.9 |
Transcript
| Transcript ID | pfu_aug1.0_4246.1_01680.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4246.1_01680.t1 atgggtacgatgcagtcatcctctcagcgtagacaaccgcttcatgctgatccgcattcacaaaggttatccacttcgac acctaccggtgctagaagacgacttccgtcgacaccggctccgccacttttacccttaccttatggtacgcgaccaaata ttcctgcgttctccggagagaataaggccggggaagtaacgttcgacgtttggaagtatgatgtaaaatgccttttatct gaaggagtatatccagcctccactatccgacaatctattcggaactcgttgcgtggcaaagcccggtccatacttgtcac tatgggggaatacgtcacaccagattccattatactgaaactggaaagtacctttgggaatgtttgcgacaaagaagcca tactggaagacttttaccgtcagtcgcagaatactactgagagtgtcgcagaatacggaatgcgtctagccaatttgctc cagattcctgttgatcgaggtcatattacatcagacgaacgtgatagtatgctgcgttccaaattcttttcgggacttaa agatccactgttgaagaccgctattcgttttaagtatgaagctacccgagactttgatactttgctgcgtgacactcgcg ccatagagcagcagatgaaagcgacatccgcggcacctacacctactcagccagataccaagcctgcagtgaaacaacag acaacttcacgagtatcactagaagatatcgcaaagaagctagagactttgactactcaagtcaacgatcttcagacaga gatgtcgaccgttcgaaatggtaaccaaagacaaggttccagttaccgagataaggacgaactagatgaatcacagatac accaccttgaagacttactacagcgatatgatgacatactgtccaaggcagatgatgatattggtcacaacactaccgtg aaacaccgcattgacctttacgatcctgtaccctttaagcaacgctatagacgaattccaccatcgatgtttagtcaagt tagagatcatcttcagcaactactatctgcaggaatcattcgtaaatcccattcgccttttacctctaatgtcgtgttgg ccaagaagaaagatggaaagttacgtttatgtatagactttaggcagcttaaccaacgtacgattaaagataactatgcc ctgccacgcattgatgaacttcttgagtcactttctggtaaccgctacttttctgttctggacatgaaatctggatacca ccagatagagatagaggattcacacaaggagcgaacagcctttacagtgggaccccttggcttttatgagtataaccgga tgcctttcgggttgacaaacgcgccggccacttaccaaagagtcatggaggaatgtcttggggatctccatctgaacatc tgttttatctatctcgatgacctgattattgtgtccaagacctttgaagaacacttagatagacttcaacgtgttttcca gaaactgagggaagccggactgaagttgactccaaagaaatgccaccttatgatgaagaaagtgaagtatgtcggtcatg ttgtatcagaagagggaatagagcctgatccacagaagatagagaaagttatagaatggcccactccaacatccaaagaa gaagttagacaattcctaggtttcgttggctattataggaagtttgtgaaggatttttctaagatcgctaaacccttaaa cagccttttaccagctactagacgaaaaggaaccaagaaaaagaaagaagaagccatgaatccctttacctggaacgaag aacaacaaacagctttcgatgctttgaagtcccagctcatgaagccacctatacttggttacccagactataagcagccc ttcgaactacatacagatgcctgtgcgaaaggattaggtgctgtcttataccaacttcaaggagacaagaaacgggtcat ttcctatgccagccgtggactttccaaagcagagcaacactatccagctcataagcttgaatttctttcattgaaatggg ccgtcacggagaaatttaaagactacttatacggcaaccagttcacagtatacactgacaataatccgctcacctatgtg ctaacatctgcacaactcgatgccactggtcaccgctggatcgccgcattggcagcctacaactttgaccttaagtatcg tccagggagaaacaacgctgatgctgatgccatgtcacgtttacctggaatactagaagatcatcgcacatcagatacag tcacctgcgattctatcaaagccatttgccagtcacatcagattcagcctatttacatagagagtttgacatcatctcca gacgttatagatagccatctagatttacccagatttccaacgatagatatcagatcagaacaacactgcgatcctgattt atgcctctggtttgatataattcagcagcaacagaaggttaccaagcaacaactcccacctaacacctggcagagtactc tacttcagaattatgaccgcctgcgtgttattgataacatcttattcagagagattatcatagatgatcaacctaagctc cagcagattcttccgagctcgctcattccacgagtactcaactacctgcatgacagattcggccatcaaggaagagatag aacaacatctttagtaaaagacagatttttctggcctgggatgtgcaaagatatagataactggatttccaactgcggca gatgcgtacgaagaaagtcaccaaccaccactagagctccattagttaacatctccacctcagagccattggaactcgta tgcatggactatctttgcctagaaagatcaaagggtggattcgattcagtacttgttatcaccgaccatttcactaagta ctcgattgccataccaaccagaaatcagactgcaaggacaacagcagaagcactcttcagaaacttcatcgtacattacg gcattccatctaagcttcattccgaccaaggagcaaactttgaaagcaaagtgatcaaagaactgtgccatcttcttaac atcacgaagagcagaacaactccttaccatcctatgggcaatggacagtgcgagcgttttaaccggacattgattggaat gctaggaacactagaagaagatcagaagaaagactggaagaactatattagtccgctcgttcatgcctacaactgcaccc gccatgattccaccggcgtatctccatatctactgatgttcgggagagagcctagattgcccattgatatatcgtttggc acttaccagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaccagagaagataatacagacagagaaccgactccacgacc gaagaagcctgaacatttaccgagcgagacaaagaagtcacctcaacctgaagaaaaggcagatatacctactgatccca gcactgttgtatcagaacacaacactagccatggcgaatcagaagatgaagatgatattgttttggtgcgaaacccagtg atatgtccaagagaagattcttgttcatctgcagacactggagggacagaatccactacctcgcagagtccatctgataa tcacgatgcgacatctgaaaagcagtcggaccataatgaccgtattgaaagcaccagttccgagtcggttgccagatcat caagagatgctttggaccctacacagaatgatggctcatctagtcactcggaatccgtacattccgaacaaccaagacga ccaacccgagagagaagacctcctgcctggaccaaagactatgatatgtgtgctagtgtaccgatagctgctggtccaga ctggaaaatccgagcagattatttgaaaagttttgcgcgttccgaactgttcagtgacagagacaacgcagcattgactt ccgcgctactccgtatagtgactgaaaagtga |
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Protein
| Protein ID | pfu_aug1.0_4246.1_01680.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4246.1_01680.t1 MGTMQSSSQRRQPLHADPHSQRLSTSTPTGARRRLPSTPAPPLLPLPYGTRPNIPAFSGENKAGEVTFDVWKYDVKCLLS EGVYPASTIRQSIRNSLRGKARSILVTMGEYVTPDSIILKLESTFGNVCDKEAILEDFYRQSQNTTESVAEYGMRLANLL QIPVDRGHITSDERDSMLRSKFFSGLKDPLLKTAIRFKYEATRDFDTLLRDTRAIEQQMKATSAAPTPTQPDTKPAVKQQ TTSRVSLEDIAKKLETLTTQVNDLQTEMSTVRNGNQRQGSSYRDKDELDESQIHHLEDLLQRYDDILSKADDDIGHNTTV KHRIDLYDPVPFKQRYRRIPPSMFSQVRDHLQQLLSAGIIRKSHSPFTSNVVLAKKKDGKLRLCIDFRQLNQRTIKDNYA LPRIDELLESLSGNRYFSVLDMKSGYHQIEIEDSHKERTAFTVGPLGFYEYNRMPFGLTNAPATYQRVMEECLGDLHLNI CFIYLDDLIIVSKTFEEHLDRLQRVFQKLREAGLKLTPKKCHLMMKKVKYVGHVVSEEGIEPDPQKIEKVIEWPTPTSKE EVRQFLGFVGYYRKFVKDFSKIAKPLNSLLPATRRKGTKKKKEEAMNPFTWNEEQQTAFDALKSQLMKPPILGYPDYKQP FELHTDACAKGLGAVLYQLQGDKKRVISYASRGLSKAEQHYPAHKLEFLSLKWAVTEKFKDYLYGNQFTVYTDNNPLTYV LTSAQLDATGHRWIAALAAYNFDLKYRPGRNNADADAMSRLPGILEDHRTSDTVTCDSIKAICQSHQIQPIYIESLTSSP DVIDSHLDLPRFPTIDIRSEQHCDPDLCLWFDIIQQQQKVTKQQLPPNTWQSTLLQNYDRLRVIDNILFREIIIDDQPKL QQILPSSLIPRVLNYLHDRFGHQGRDRTTSLVKDRFFWPGMCKDIDNWISNCGRCVRRKSPTTTRAPLVNISTSEPLELV CMDYLCLERSKGGFDSVLVITDHFTKYSIAIPTRNQTARTTAEALFRNFIVHYGIPSKLHSDQGANFESKVIKELCHLLN ITKSRTTPYHPMGNGQCERFNRTLIGMLGTLEEDQKKDWKNYISPLVHAYNCTRHDSTGVSPYLLMFGREPRLPIDISFG TYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXDTREDNTDREPTPRPKKPEHLPSETKKSPQPEEKADIPTDPSTVVSEHNTSHGESEDEDDIVLVRNPV ICPREDSCSSADTGGTESTTSQSPSDNHDATSEKQSDHNDRIESTSSESVARSSRDALDPTQNDGSSSHSESVHSEQPRR PTRERRPPAWTKDYDMCASVPIAAGPDWKIRADYLKSFARSELFSDRDNAALTSALLRIVTEK |
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