Gene
| Gene Model ID | pfu_aug1.0_42602.1_48493 |
|---|---|
| Locus | scaffold42602.1 : 1 ... 18316 : - |
| To GenomeBrowser | scaffold42602.1:1..18316 |
| Genes list of scaffold | scaffold42602.1 |
| Synonym | pfu_aug2.0_495.1_17492 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_42602.1_48493.t1 | 2 | 1 | Lipase | 1 | 29 | 4.6e-16 | 58.9 | 1.9e-07 | 0.00057 | 19.1 |
| pfu_aug1.0_42602.1_48493.t1 | 2 | 2 | Lipase | 26 | 64 | 4.6e-16 | 58.9 | 5.3e-15 | 1.6e-11 | 44.0 |
| pfu_aug1.0_42602.1_48493.t1 | 1 | 1 | Pkinase_Tyr | 124 | 318 | 0.0 | 223.7 | 0.0 | 0.0 | 223.2 |
| pfu_aug1.0_42602.1_48493.t1 | 1 | 1 | Pkinase | 124 | 316 | 1.7e-32 | 112.5 | 8.6e-36 | 2.5e-32 | 112.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_42602.1_48493.t1 | gi|260813328|ref|XP_002601370.1| | hypothetical protein BRAFLDRAFT_82699 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_42602.1_48493.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_42602.1_48493.t1 gaagatgtcaatgtgattgctgtcgactggaagtcaggagctaacaaaatatatcctcaagctgttgcaaacacaagagt agttggaatggatccagcgggtccactttttgaaaaatacgactccattgtgcgtcttgatcctggtgacgcaacattcg ttgacgtcattcataccgatgctcttccctttgaagaagcaggacaccaaaatgagaatatcactcttttttatatgcgt atgaatgaatatggtcattcttgttttcatgttttaaaatgtcaacaagatgctgtttctagacaaagacgaatgcacta ccaatgtttgatttcagactgtgatgagtatagttatggtgttaactgtggaaccatgtatgtagcaatggaatattgta aaaacggagacctaaggacgtacttacgccgtttgagaaaaagcaagaacaatctatatgccaatgccaaggtcatttct ccagttcagaagtctgtccttttgaaactatcactagacgtggcgtcagggttgtcacatttagcagaaaagcagataat ccatagagatgttgcagcacggaatgttctcttggatgagcaccttattgccaaagtagccgactttggactttcgaagc acgacgatacatacgtaaaaacctctaatacaagagtccctgtacgttggctagctcccgaatcattgtttaatgcctta tacacaacacagagtgacgtttggtcattcggggtgttattatgggagatcgccaccctaggagggacgccataccatgg tctggatacacagcaaatgtgcaacttgataaagcaagggttccgtatgaggagaccgaggaactgtgatccagcattat atgccatgatgttacagtgttggtatgagagacctgaaagtcgaccatgtatcaaagaaatagtctctagattacagagg atgctagaggatagtcaagtgtacatgaacctggatcttgatgtcaacgaggggaaccagtatgccgaaatcaactaa |
|
Protein
| Protein ID | pfu_aug1.0_42602.1_48493.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_42602.1_48493.t1 EDVNVIAVDWKSGANKIYPQAVANTRVVGMDPAGPLFEKYDSIVRLDPGDATFVDVIHTDALPFEEAGHQNENITLFYMR MNEYGHSCFHVLKCQQDAVSRQRRMHYQCLISDCDEYSYGVNCGTMYVAMEYCKNGDLRTYLRRLRKSKNNLYANAKVIS PVQKSVLLKLSLDVASGLSHLAEKQIIHRDVAARNVLLDEHLIAKVADFGLSKHDDTYVKTSNTRVPVRWLAPESLFNAL YTTQSDVWSFGVLLWEIATLGGTPYHGLDTQQMCNLIKQGFRMRRPRNCDPALYAMMLQCWYERPESRPCIKEIVSRLQR MLEDSQVYMNLDLDVNEGNQYAEIN |
|