Gene
| Gene Model ID | pfu_aug1.0_4271.1_01686 |
|---|---|
| Locus | scaffold4271.1 : 35630 ... 39985 : - |
| To GenomeBrowser | scaffold4271.1:35630..39985 |
| Genes list of scaffold | scaffold4271.1 |
| Synonym | pfu_aug2.0_2882.1_09007 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-HES5 |
| Description | Best hit to EAW78058 hairy and enhancer of split 1, (Drosophila) [Homo sapiens] with 7e-51 by a BLASTP search against NCBI Homo sapiens nr database. The amino acid sequence from corresponding EST assembled sequence has a WRPW motif. This annotation is based on NJ, ML, and BI. |
| mRNA evidence | pfudmixc25580g05598 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4271.1_01686.t1 | 1 | 1 | HLH | 19 | 76 | 3.5e-15 | 55.4 | 1.2e-18 | 5.8e-15 | 54.7 |
| pfu_aug1.0_4271.1_01686.t1 | 1 | 1 | Hairy_orange | 93 | 131 | 5.7e-12 | 45.1 | 2.6e-15 | 1.3e-11 | 44.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4271.1_01686.t1 | gi|54292102|ref|NP_001005848.1| | transcription factor HES-1 isoform 1 [Gallus gallus] | 6.00036e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4271.1_01686.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4271.1_01686.t1 atggatgaatttgatcaagaaaatcgctcttatccagaggagaaattcatgaccagaaagagtaagaaacctctgatgga gaagagaagaagagcccgtatcaataactgtttatcacagcttaaagccttagtactgcaggccatgaaaaaagatacga ctcattattccaaacttgagaaggcagatattttagagatgaccgtaaagtatctcaggaacctccagcgacgtcagatc agctcagcagtggctgccgatcccacagtggccgctaaattcactgtcggattcaatgaatgcgcatcggaagtggctcg ctaccttaataatgcccacggaattaacgaagatgtgcgaggacgcttgttaggacatatttcaaactgcgtccagaata caaactctcaacagatgcagaatttgcagatgggtcaagcgtttatgcaacctttgcacgtgcagattcccgctgctcag aatggactcggtgtaaaccatactcaaccggaaagtttacttactgcgccgcagaccatgttccagtctccggtttatct cacataa |
|
Protein
| Protein ID | pfu_aug1.0_4271.1_01686.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4271.1_01686.t1 MDEFDQENRSYPEEKFMTRKSKKPLMEKRRRARINNCLSQLKALVLQAMKKDTTHYSKLEKADILEMTVKYLRNLQRRQI SSAVAADPTVAAKFTVGFNECASEVARYLNNAHGINEDVRGRLLGHISNCVQNTNSQQMQNLQMGQAFMQPLHVQIPAAQ NGLGVNHTQPESLLTAPQTMFQSPVYLT |
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