Gene
| Gene Model ID | pfu_aug1.0_4294.1_66934 |
|---|---|
| Locus | scaffold4294.1 : 1 ... 28005 : - |
| To GenomeBrowser | scaffold4294.1:1..28005 |
| Genes list of scaffold | scaffold4294.1 |
| Synonym | pfu_aug2.0_1012.1_08094 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Chitin synthase like protein |
| Description | Chitin synthase, hit to BLAST(NCBI, XP_003088165.1) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4294.1_66934.t1 | 2 | 1 | Glyco_trans_2_3 | 248 | 308 | 3.5e-17 | 62.7 | 0.09 | 150.0 | 1.9 |
| pfu_aug1.0_4294.1_66934.t1 | 1 | 1 | Glyco_tranf_2_3 | 718 | 875 | 6.6e-11 | 42.4 | 6.5e-14 | 1.1e-10 | 41.7 |
| pfu_aug1.0_4294.1_66934.t1 | 2 | 1 | Chitin_synth_2 | 724 | 950 | 1.2e-27 | 96.5 | 6.0e-28 | 9.9e-25 | 86.9 |
| pfu_aug1.0_4294.1_66934.t1 | 2 | 2 | Glyco_trans_2_3 | 725 | 938 | 3.5e-17 | 62.7 | 2.1e-20 | 3.5e-17 | 62.7 |
| pfu_aug1.0_4294.1_66934.t1 | 2 | 2 | Chitin_synth_2 | 975 | 1067 | 1.2e-27 | 96.5 | 1.0e-06 | 0.0017 | 16.8 |
| pfu_aug1.0_4294.1_66934.t1 | 1 | 1 | I-set | 1078 | 1164 | 9.1e-17 | 60.6 | 1.2e-19 | 2.0e-16 | 59.5 |
| pfu_aug1.0_4294.1_66934.t1 | 1 | 1 | Ig_2 | 1085 | 1157 | 1.2e-06 | 28.4 | 7.5e-10 | 1.2e-06 | 28.4 |
| pfu_aug1.0_4294.1_66934.t1 | 1 | 1 | Ig_3 | 1087 | 1151 | 1.0e-08 | 35.5 | 3.0e-11 | 4.9e-08 | 33.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4294.1_66934.t1 | gi|60654961|gb|AAS77206.1| | chitin synthase 2 [Brugia malayi] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_4294.1_66934.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4294.1_66934.t1 atgcagcacccacagcgaaactctaaaacacccaatgcaaacacgcagagcagatatccacagaaagagaaatgcaagtc gcatggattcaagacaacaatgtcttatcctaacaatgaaagcgtagacaaacaagaagggggacaaatcatgactgata agaaggcctcgtcaactagttcatctggatcatctgaaacagacagcagtgagtctgaagaggagtctgtggataacatc ggggatcgcccaaaaatgtcttgctgtgctcgtctttgtgctttcgcatccggtattttggtgctttgccgttgcgatga cgacgacgaagacgagaacgaaccaggtgaaaaacaggtggatatggagaagaagtccccatacgcaatgaaacgcttaa ccttctgcctcaaagtcatatacctggtgcttctattcatccttatcattggaaccgggtgtctgtcccgaacgttgatc catataatgatatggaaactatcgccacctcacacaaatgaccaaaatttaagacttgtcagtatgtttggatatcttca gcccgacactgatctcatcagtcgaaatctgtcatgtaatagtacgacatgcagcaaaggacttccgttaacgtggacct gtgaacccgttgataaccagatctgctcattagccgaggatgttccgactactaatgtggcttggttttgggcagttatg ctgaccatttcaacgccctacttttacacctttctgacaaacctctcgagatactgcacaaaatttacccataaaattaa ttacaaaatactagtcgtgggtataattcgtgatttgatccattcagcagcgttatgtctattggtatttttcgttctcc ctaccatggctccagatatggcggcggtaacggttttcattgtgatttgtgtacctgtcatcttaaacatcaatttgaag aggttgcttccgagaaaaaaggaaaaccaagtagggtcttcacaagcaggagcaagtaccgagccacggaataagttacg gttaatgcgagtcgcaatagctttattagcgacgttcttgtttattgcatcaatctctttctttgtcgcccttgttgcaa ggtcatcgtatgttaataattatcttatcatagagacagtctttgcttgtattctcgtatctgttgaatggttcgaaagc tttgtaatatttagatcaaaacgtgtaatcagcaaagaggacgcatatgggagccgtaaggcggtcatctacaatactaa tgtaacacagaaatgcttgagcttcagaaactttctacgctgggggtttctttatgccgcctgtaaaaaagaaagagaga tttgtgtgttggcgttcataaaactagtgactttaaattttctttttctacctttgatcgttggcttcatgacacattgg aaggtggtatggtggactattctcttcgttccgaacgctaacctgactgtccactaccatattcacagtaaaatgaacct gacatccagcgaagacgtggcttatggttgtaattcagttacaccgttcatcgtcatgatcatctgcgtctgctcaacgt tcgtgttcttcaagcttgcacaacatgcctgtcggattttataccaaaaaagtgaatttgcaatccccattctgttaaac ctgctgattactccattcgttcttgctattgttcaatggaataatttgtcttttatcgtcgatggatcacacattctttt tgatgacgcctttactgatgacgagaatggcaaacgtgtcttaaataaatatgcaacagatctttataaagccatcgacc attccatgagactttgctacaagactaagttagatgaggagtatgactataagaaggacaaaacaagggtaacagaaaaa acaacagactatggatggcgtgtagaatgggacatcattggaaagaatgcagaaagagcttttagaaatgaattaaataa atcagaaacttcaaaaacaacgaaactgattatacactttaaggacaaggcaaaaataagagttaaaaaacgttggagtc aggtaatgtacatgcattatctgctgacaagaagattcaaaccaaagaacgaagatccagctcaaaagctaaagcgtctt cagcagactttcattctggccctagacggtgatgtggacttccaaccagacgctgttgactatctcctccaaggcatggc aaggaataatactgttggggcttgctgtggaagaattcatcctataggatcaggtcctatggtgtggtaccagaagttcg agtatgctgctagtcactggcttcagaaagccacagaacatgtttgtgggtgtgtcttatgtagccctggttgcttcacg ttgatgagaggaagtgcgattgtggatgagaatgtcctggcaacctacagcaaagaaccaaaaacaccatggcagatggt gcaatacgatcagggtgaagaccgatggttttgtactcttctgctgaagcagggatacagagttgaatactgtgctgcat cagacgctaagacctttgcaccagaaggattcacggaattcttcaaacagcgcagaagatggagcccttcgacaattgct aatatcatagatatccttgcaagcttcggatatatcgccgggaaaaatgatagcatatccaagctatatctagtttacca agcttttctcctatgtacggcaataattacccctgcatcgatccttctactaatgattggagccatcaatatagcgtttg acattcctccatggggagccatgatcattgttctgttacctacagtcatatttaccatatccatctatgctgccacagag gatacacagttgttcttggcgtccgtcatatcaggtacctacgccatagtaatgatgatcgtcataatcggcatccttaa gacgggaatagaggcgggattctgctcagaaactacgatcctcatttgttttgttggaggaatatttgtcgttgctgcca ttatacatccaatggagtggacctgtattttacctggcctgttatacttctttgctgtacctgctgtgtcagtggtgctt atggtctacgccattggtaatatccacgttacatcatggggcacaagggagggaactgtggacaagaaacaaaagggcaa ggaagtagaatgtggtttcgggaatgtttgcagaactaaattcaaagacataacactggaagtgggtgacaatttagaac tgcgagcagacgtctcaggataccccaaaccaaagatcacgtggtaccatgacagcaagaaacttcacaggtcaaatacc atcaacacattttttgatgtttccacagcaagactgaagagaaaaagtatgcaagtgtttgatagtgggacatatagctg cgtggcagagaacgagtctgggagatgtaaaatagaagcaaaagtccgtgtagaag |
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Protein
| Protein ID | pfu_aug1.0_4294.1_66934.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4294.1_66934.t1 MQHPQRNSKTPNANTQSRYPQKEKCKSHGFKTTMSYPNNESVDKQEGGQIMTDKKASSTSSSGSSETDSSESEEESVDNI GDRPKMSCCARLCAFASGILVLCRCDDDDEDENEPGEKQVDMEKKSPYAMKRLTFCLKVIYLVLLFILIIGTGCLSRTLI HIMIWKLSPPHTNDQNLRLVSMFGYLQPDTDLISRNLSCNSTTCSKGLPLTWTCEPVDNQICSLAEDVPTTNVAWFWAVM LTISTPYFYTFLTNLSRYCTKFTHKINYKILVVGIIRDLIHSAALCLLVFFVLPTMAPDMAAVTVFIVICVPVILNINLK RLLPRKKENQVGSSQAGASTEPRNKLRLMRVAIALLATFLFIASISFFVALVARSSYVNNYLIIETVFACILVSVEWFES FVIFRSKRVISKEDAYGSRKAVIYNTNVTQKCLSFRNFLRWGFLYAACKKEREICVLAFIKLVTLNFLFLPLIVGFMTHW KVVWWTILFVPNANLTVHYHIHSKMNLTSSEDVAYGCNSVTPFIVMIICVCSTFVFFKLAQHACRILYQKSEFAIPILLN LLITPFVLAIVQWNNLSFIVDGSHILFDDAFTDDENGKRVLNKYATDLYKAIDHSMRLCYKTKLDEEYDYKKDKTRVTEK TTDYGWRVEWDIIGKNAERAFRNELNKSETSKTTKLIIHFKDKAKIRVKKRWSQVMYMHYLLTRRFKPKNEDPAQKLKRL QQTFILALDGDVDFQPDAVDYLLQGMARNNTVGACCGRIHPIGSGPMVWYQKFEYAASHWLQKATEHVCGCVLCSPGCFT LMRGSAIVDENVLATYSKEPKTPWQMVQYDQGEDRWFCTLLLKQGYRVEYCAASDAKTFAPEGFTEFFKQRRRWSPSTIA NIIDILASFGYIAGKNDSISKLYLVYQAFLLCTAIITPASILLLMIGAINIAFDIPPWGAMIIVLLPTVIFTISIYAATE DTQLFLASVISGTYAIVMMIVIIGILKTGIEAGFCSETTILICFVGGIFVVAAIIHPMEWTCILPGLLYFFAVPAVSVVL MVYAIGNIHVTSWGTREGTVDKKQKGKEVECGFGNVCRTKFKDITLEVGDNLELRADVSGYPKPKITWYHDSKKLHRSNT INTFFDVSTARLKRKSMQVFDSGTYSCVAENESGRCKIEAKVRVE |
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