Gene
| Gene Model ID | pfu_aug1.0_42945.1_05233 |
|---|---|
| Locus | scaffold42945.1 : 1 ... 4880 : - |
| To GenomeBrowser | scaffold42945.1:1..4880 |
| Genes list of scaffold | scaffold42945.1 |
| Synonym | NA |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | twitchin |
| Description | Twitchin partial sequence. BLASTP top hit to AB062882 (Mytius galloprovincialis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_42945.1_05233.t1 | 4 | 1 | I-set | 5 | 45 | 1.6e-32 | 111.1 | 2.0e-06 | 0.0059 | 16.4 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 1 | V-set | 9 | 35 | 3.3e-12 | 46.2 | 0.00016 | 0.47 | 10.3 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 1 | Ig_2 | 9 | 42 | 5.7e-12 | 45.5 | 0.014 | 41.0 | 4.3 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 1 | ig | 9 | 33 | 7.7e-12 | 45.1 | 0.0085 | 25.0 | 5.0 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 2 | I-set | 52 | 120 | 1.6e-32 | 111.1 | 1.4e-07 | 0.00041 | 20.1 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 2 | V-set | 58 | 95 | 3.3e-12 | 46.2 | 0.0027 | 8.1 | 6.3 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 2 | Ig_2 | 65 | 96 | 5.7e-12 | 45.5 | 0.00092 | 2.7 | 8.1 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 2 | ig | 66 | 121 | 7.7e-12 | 45.1 | 9.5e-06 | 0.028 | 14.5 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 3 | I-set | 163 | 198 | 1.6e-32 | 111.1 | 5.8e-08 | 0.00017 | 21.3 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 3 | V-set | 165 | 196 | 3.3e-12 | 46.2 | 1.3e-06 | 0.0038 | 17.0 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 3 | Ig_2 | 173 | 197 | 5.7e-12 | 45.5 | 0.00022 | 0.64 | 10.1 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 3 | ig | 175 | 193 | 7.7e-12 | 45.1 | 1.1e-05 | 0.034 | 14.2 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 4 | I-set | 218 | 295 | 1.6e-32 | 111.1 | 2.5e-16 | 7.4e-13 | 48.1 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 4 | Ig_2 | 238 | 292 | 5.7e-12 | 45.5 | 8.3e-07 | 0.0025 | 17.9 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 4 | ig | 245 | 282 | 7.7e-12 | 45.1 | 0.0038 | 11.0 | 6.1 |
| pfu_aug1.0_42945.1_05233.t1 | 4 | 4 | V-set | 258 | 289 | 3.3e-12 | 46.2 | 0.0016 | 4.6 | 7.1 |
Transcript
| Transcript ID | pfu_aug1.0_42945.1_05233.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_42945.1_05233.t1 tatacaccaggcaagatggagatacagaggagagagaaccgttgtcttctccgcattatgaatgctgatcctgatgatga ggcagaatattcgtgtgaatgtggaaaagccaagacgtcatgtaaactcagtgtcactgaacctgaatgggctttcatga agcagcttgaggacgtagagggaatggagagagagaaggccatatttgagtgtgatgtcaacgacccggaggcagaagta cattggtacaaagctgacggcaaggtaatttctaagccatttcaaacattttctggtcactatttgccttcagtttactc ttattatttacgtctgaaccgaatcgaaatcagcaattctacgtcgatgcatcgaaccgacattgctaatttcgaagcac cgaaattttcggtgcaccgcccagccctattatcagtgaatccacatgtaagattttatatctttgttttgttctatcat aattacaggagagtagaagtagtaaggaagggagagacccacaagcttgtgatttctaacttgaagagagaggacgcagg tctatatgcctgtcaggtcggagagagatctactaaatctgacgtcatcgtcgacgagttgcccaagccacccaaggtag atcccaaagatatacctgaggagatcattataaagagaggggaaaccatagctctcgatattccttacattggtgtgcct gtacccacagcccagtggaagaaggacggcacagccctgagtgaggccgacacagacatacagatgacgcccgatcgtgc ccagctcaggattcctgccgcagagagaggagactcgggagagtatgaactcactcttagtaacgaagttggaacggaag ttatacctgtagctgtcagggtattag |
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Protein
| Protein ID | pfu_aug1.0_42945.1_05233.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_42945.1_05233.t1 YTPGKMEIQRRENRCLLRIMNADPDDEAEYSCECGKAKTSCKLSVTEPEWAFMKQLEDVEGMEREKAIFECDVNDPEAEV HWYKADGKVISKPFQTFSGHYLPSVYSYYLRLNRIEISNSTSMHRTDIANFEAPKFSVHRPALLSVNPHVRFYIFVLFYH NYRRVEVVRKGETHKLVISNLKREDAGLYACQVGERSTKSDVIVDELPKPPKVDPKDIPEEIIIKRGETIALDIPYIGVP VPTAQWKKDGTALSEADTDIQMTPDRAQLRIPAAERGDSGEYELTLSNEVGTEVIPVAVRVL |
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