Gene
| Gene Model ID | pfu_aug1.0_4300.1_16335 |
|---|---|
| Locus | scaffold4300.1 : 136 ... 19585 : + |
| To GenomeBrowser | scaffold4300.1:136..19585 |
| Genes list of scaffold | scaffold4300.1 |
| Synonym | pfu_aug2.0_5.1_16677 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4300.1_16335.t1 | 2 | 1 | Tim17 | 16 | 35 | 4.9e-29 | 100.9 | 0.46 | 6900.0 | -3.0 |
| pfu_aug1.0_4300.1_16335.t1 | 2 | 2 | Tim17 | 124 | 246 | 4.9e-29 | 100.9 | 3.3e-33 | 4.9e-29 | 100.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4300.1_16335.t1 | gi|72006105|ref|XP_783220.1| | PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-B [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4300.1_16335.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4300.1_16335.t1 atgcaccggaccgacccaaggcctcgttttcgcgagacccatgacgtcacgacgaacatccctatgcagaaacatatcaa tttttctgcaaccagtacgaaagatcccagtaacaagtacgaaagatcccgtacgaaaaatctcggtatgaaacggtatc ggaacgaaagatcccggaacctaggcaaagcctatataggagagcacagtattcaagtttccttccttcgatatcagtat gtgttacaagggtcatccggatttttttctaactatgttgacctaattttcgtctttagtctatattttaaaccggaagt agatcaccttaacactcagggtgcaccagactcggtaccagagataactccatggcgaatagtggatgattgtggtggag ccttttctatgggccttataggcggctctctgtttcatgctattggaggattcagaaatgctaaagggggtttcacgaac aggctggctggtatgaaaactggaattaaagtgaaatctcctgtaactggtggtaattttgcagtgtggggaggtttatt ttcagctattgactgttctttggtatatataaggaaaaaagaggatccattcaactctatagccagtggtgcattaacag gagctgtccttgcatgtagaaatggtccagttgccatggtcggatcagcagcaataggaggccttttgctgggattaatt gaaggagttggtataatgatgaataaaatgatggcagatcaatttaatccagccaatagaatgatgatggaggaagcccc tccccctgggccattgccaatctcgtcgccgtcacaagattccgctccaacatcatcgtttccgtttacgacgccgtacc aggcacatcagtga |
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Protein
| Protein ID | pfu_aug1.0_4300.1_16335.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4300.1_16335.t1 MHRTDPRPRFRETHDVTTNIPMQKHINFSATSTKDPSNKYERSRTKNLGMKRYRNERSRNLGKAYIGEHSIQVSFLRYQY VLQGSSGFFSNYVDLIFVFSLYFKPEVDHLNTQGAPDSVPEITPWRIVDDCGGAFSMGLIGGSLFHAIGGFRNAKGGFTN RLAGMKTGIKVKSPVTGGNFAVWGGLFSAIDCSLVYIRKKEDPFNSIASGALTGAVLACRNGPVAMVGSAAIGGLLLGLI EGVGIMMNKMMADQFNPANRMMMEEAPPPGPLPISSPSQDSAPTSSFPFTTPYQAHQ |
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