Gene
| Gene Model ID | pfu_aug1.0_4300.1_16336 |
|---|---|
| Locus | scaffold4300.1 : 20219 ... 29555 : - |
| To GenomeBrowser | scaffold4300.1:20219..29555 |
| Genes list of scaffold | scaffold4300.1 |
| Synonym | pfu_aug2.0_5.1_16676 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | vestigial-like |
| Description | NCBI BLASTP hit to emb|CBN80870.1| [Dicentrarchus labrax] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4300.1_16336.t1 | 3 | 1 | VGLL4 | 5 | 97 | 1.4e-18 | 67.5 | 6.8e-20 | 5.0e-16 | 59.1 |
| pfu_aug1.0_4300.1_16336.t1 | 3 | 2 | VGLL4 | 105 | 158 | 1.4e-18 | 67.5 | 4.4e-06 | 0.032 | 14.0 |
| pfu_aug1.0_4300.1_16336.t1 | 3 | 3 | VGLL4 | 169 | 187 | 1.4e-18 | 67.5 | 0.11 | 790.0 | -0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4300.1_16336.t1 | gi|47086111|ref|NP_998440.1| | transcription cofactor vestigial-like protein 4 [Danio rerio] | 2.0e-12 |
Transcript
| Transcript ID | pfu_aug1.0_4300.1_16336.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4300.1_16336.t1 atggatacccacgatgcaccgctcaatttgtcattatctagttcatccatatcgtcatcgtcgtcgtcatcagctttcag ttcacaagtatcacgtccatcagtcatcacatgcgctccaaccggaaatgacagaccacatcactatggaaacgcatcct cctcgccaccatcatcgttatcgccgtcatcccatcatgcaatatccccaaatcggcgggaagttatcacagaagtttgt gatcctgcaattgaagaacatttcagacgttctctaggtcgtagctatgactacatgtcaccaaaatcatcccccaaggt cacgacacagttacctcctcctccacttcctccccagaaagcggcatcaccaactacagtttctatgacaacaaacggca atcactccaatagtcctaatgtatctataacaggttcagtagatgagcattttgccaagtctttagggagtaacacttgg tcggccatcaaagccaaggagtctagccaggacatgttcacgggatctgtagacgatcattttgccaaagctctcggtga tacgtggttacgaattaaagcagaaagagaaccgagccccacacaaagttccgggtcaaggtcacctccacagaatatgt caccaaggcaacaaaggcatgattcatcattgctgtccacctga |
|
Protein
| Protein ID | pfu_aug1.0_4300.1_16336.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4300.1_16336.t1 MDTHDAPLNLSLSSSSISSSSSSSAFSSQVSRPSVITCAPTGNDRPHHYGNASSSPPSSLSPSSHHAISPNRREVITEVC DPAIEEHFRRSLGRSYDYMSPKSSPKVTTQLPPPPLPPQKAASPTTVSMTTNGNHSNSPNVSITGSVDEHFAKSLGSNTW SAIKAKESSQDMFTGSVDDHFAKALGDTWLRIKAEREPSPTQSSGSRSPPQNMSPRQQRHDSSLLST |
|