Gene
| Gene Model ID | pfu_aug1.0_4310.1_08864 |
|---|---|
| Locus | scaffold4310.1 : 1 ... 18765 : - |
| To GenomeBrowser | scaffold4310.1:1..18765 |
| Genes list of scaffold | scaffold4310.1 |
| Synonym | pfu_aug2.0_240.1_00480 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4310.1_08864.t1 | 1 | 1 | Acetyltransf_1 | 87 | 163 | 1.3e-14 | 53.9 | 7.9e-18 | 1.9e-14 | 53.4 |
| pfu_aug1.0_4310.1_08864.t1 | 1 | 1 | Acetyltransf_7 | 87 | 163 | 7.4e-07 | 29.2 | 6.0e-10 | 1.5e-06 | 28.2 |
| pfu_aug1.0_4310.1_08864.t1 | 1 | 1 | FR47 | 107 | 167 | 1.3e-08 | 34.4 | 8.3e-12 | 2.0e-08 | 33.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4310.1_08864.t1 | gi|260830172|ref|XP_002610035.1| | hypothetical protein BRAFLDRAFT_284784 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 16 |
| egg-4cell | 3 |
| 8-16cell | 2 |
| egg-Dshape | 2 |
| trochophore | 3 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 3 |
| mantle | 2 |
| mantlePallium | 2 |
| pearlSac | 5 |
Transcript
| Transcript ID | pfu_aug1.0_4310.1_08864.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4310.1_08864.t1 atgaacttttcaggaaatatccattttatacataaaaatcgatgcattttatttgattttaaaattattgattattttag gtccagtttacttccaatcttcatcaaactttgcatgaaagtttcccatggtaagaagacgacactgagctatcgatttt caagaaatttggatcctctgacagaaacttatggcctaccattctatatgcagtacatggcccactggccggagtatttt caggttgctgtgtcaccaggcggggccattatgggatatataatgggtaaagctgagggcgcaggagaactgtggcatgg tcatgtgacagcattgactgtagctccggaatttcggcgtcttggacttgctgccaacttgatgaaaaaccttgaagaaa tttctgaaaagaagcactgttactttgtggacctgtttgtgagagtatctaataaggtggctacagacatgtacacaaag cttggctatggtgtgtacaggactgttatagaatactactctggtgacatagatgaagatgcttatgtgaccttgaccca gttggtgacaaaaacttactttgcaatccggccataccgtctttag |
|
Protein
| Protein ID | pfu_aug1.0_4310.1_08864.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4310.1_08864.t1 MNFSGNIHFIHKNRCILFDFKIIDYFRSSLLPIFIKLCMKVSHGKKTTLSYRFSRNLDPLTETYGLPFYMQYMAHWPEYF QVAVSPGGAIMGYIMGKAEGAGELWHGHVTALTVAPEFRRLGLAANLMKNLEEISEKKHCYFVDLFVRVSNKVATDMYTK LGYGVYRTVIEYYSGDIDEDAYVTLTQLVTKTYFAIRPYRL |
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