Gene
| Gene Model ID | pfu_aug1.0_43182.1_34260 |
|---|---|
| Locus | scaffold43182.1 : 1 ... 14564 : - |
| To GenomeBrowser | scaffold43182.1:1..14564 |
| Genes list of scaffold | scaffold43182.1 |
| Synonym | NA |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast best hit to DDBJ X13933(Rattus norvegicus) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_43182.1_34260.t1 | 6 | 1 | EF-hand_1 | 1 | 13 | 4.5e-34 | 113.1 | 0.071 | 48.0 | 3.6 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 1 | EF-hand_8 | 1 | 41 | 2.0e-31 | 107.3 | 9.6e-05 | 0.064 | 12.8 |
| pfu_aug1.0_43182.1_34260.t1 | 2 | 1 | EFhand_Ca_insen | 22 | 71 | 1.0e-09 | 38.2 | 4.6e-05 | 0.031 | 14.2 |
| pfu_aug1.0_43182.1_34260.t1 | 6 | 2 | EF-hand_1 | 25 | 53 | 4.5e-34 | 113.1 | 9.6e-09 | 6.5e-06 | 25.0 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 1 | EF-hand_6 | 25 | 54 | 2.5e-23 | 79.8 | 7.7e-09 | 5.2e-06 | 25.9 |
| pfu_aug1.0_43182.1_34260.t1 | 2 | 1 | EF-hand_7 | 26 | 93 | 9.2e-33 | 112.2 | 2.2e-14 | 1.5e-11 | 44.2 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 1 | EF-hand_5 | 26 | 50 | 6.4e-19 | 66.3 | 5.2e-05 | 0.035 | 13.4 |
| pfu_aug1.0_43182.1_34260.t1 | 2 | 1 | EF-hand_9 | 30 | 96 | 2.3e-07 | 30.5 | 2.1e-06 | 0.0014 | 18.4 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 2 | EF-hand_8 | 38 | 95 | 2.0e-31 | 107.3 | 2.3e-13 | 1.6e-10 | 40.4 |
| pfu_aug1.0_43182.1_34260.t1 | 3 | 1 | UPF0154 | 41 | 69 | 2.4e-07 | 30.2 | 0.00015 | 0.1 | 12.2 |
| pfu_aug1.0_43182.1_34260.t1 | 6 | 3 | EF-hand_1 | 61 | 78 | 4.5e-34 | 113.1 | 0.00015 | 0.1 | 11.9 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 2 | EF-hand_6 | 80 | 96 | 2.5e-23 | 79.8 | 0.0033 | 2.2 | 8.3 |
| pfu_aug1.0_43182.1_34260.t1 | 6 | 4 | EF-hand_1 | 81 | 96 | 4.5e-34 | 113.1 | 1.0e-05 | 0.0067 | 15.6 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 2 | EF-hand_5 | 81 | 94 | 6.4e-19 | 66.3 | 0.0061 | 4.1 | 6.9 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 3 | EF-hand_8 | 82 | 123 | 2.0e-31 | 107.3 | 9.3e-09 | 6.3e-06 | 25.7 |
| pfu_aug1.0_43182.1_34260.t1 | 3 | 2 | UPF0154 | 91 | 114 | 2.4e-07 | 30.2 | 0.1 | 68.0 | 3.1 |
| pfu_aug1.0_43182.1_34260.t1 | 2 | 2 | EFhand_Ca_insen | 100 | 132 | 1.0e-09 | 38.2 | 2.1e-07 | 0.00014 | 21.7 |
| pfu_aug1.0_43182.1_34260.t1 | 6 | 5 | EF-hand_1 | 106 | 134 | 4.5e-34 | 113.1 | 7.9e-13 | 5.3e-10 | 37.8 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 3 | EF-hand_6 | 106 | 135 | 2.5e-23 | 79.8 | 2.7e-12 | 1.8e-09 | 36.6 |
| pfu_aug1.0_43182.1_34260.t1 | 2 | 2 | EF-hand_7 | 107 | 161 | 9.2e-33 | 112.2 | 4.7e-20 | 3.2e-17 | 62.4 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 3 | EF-hand_5 | 107 | 131 | 6.4e-19 | 66.3 | 3.5e-10 | 2.3e-07 | 29.8 |
| pfu_aug1.0_43182.1_34260.t1 | 2 | 2 | EF-hand_9 | 110 | 159 | 2.3e-07 | 30.5 | 0.00063 | 0.43 | 10.5 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 4 | EF-hand_8 | 119 | 161 | 2.0e-31 | 107.3 | 5.1e-15 | 3.4e-12 | 45.7 |
| pfu_aug1.0_43182.1_34260.t1 | 3 | 3 | UPF0154 | 122 | 150 | 2.4e-07 | 30.2 | 0.00032 | 0.22 | 11.1 |
| pfu_aug1.0_43182.1_34260.t1 | 6 | 6 | EF-hand_1 | 142 | 161 | 4.5e-34 | 113.1 | 1.8e-07 | 0.00012 | 21.1 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 4 | EF-hand_5 | 146 | 160 | 6.4e-19 | 66.3 | 0.00069 | 0.47 | 9.8 |
| pfu_aug1.0_43182.1_34260.t1 | 4 | 4 | EF-hand_6 | 148 | 160 | 2.5e-23 | 79.8 | 0.14 | 95.0 | 3.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_43182.1_34260.t1 | gi|344235814|gb|EGV91917.1| | Calmodulin [Cricetulus griseus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_43182.1_34260.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_43182.1_34260.t1 gtgacggcaacatcgatttcccaaaatttatgaagatgatggattggaagatgagaaagatgtacaccaaggaagaacta atggacgcattccgtgtgtttgacaaagaaagacaaggcgtcatcaccgcgtcagaactgcgtcactttatgacgaatct cggagaaaaactctctgatgacgaagtggacgaaatgatacgaattgtagacgtagaggggtcaggacaagtcagatacg aaggaaatgggacaatagacttcccagaattccttaccatgatgtcgaggaagatgaaagatcaagactccgaagaggaa attcgagaggcattccgagtgttcgataaagacggcaatggtttcattagtgcagctgaattacgtcacgtgatgacaaa tctcggagaaaaactcacggacgaggaggtagacgagatgatacgagaagcagacattgacggtgacggacaggttaatt atgaag |
|
Protein
| Protein ID | pfu_aug1.0_43182.1_34260.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_43182.1_34260.t1 DGNIDFPKFMKMMDWKMRKMYTKEELMDAFRVFDKERQGVITASELRHFMTNLGEKLSDDEVDEMIRIVDVEGSGQVRYE GNGTIDFPEFLTMMSRKMKDQDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY E |
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