Gene
| Gene Model ID | pfu_aug1.0_43433.1_12521 |
|---|---|
| Locus | scaffold43433.1 : 1 ... 4821 : - |
| To GenomeBrowser | scaffold43433.1:1..4821 |
| Genes list of scaffold | scaffold43433.1 |
| Synonym | pfu_aug2.0_1143.1_11462 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_43433.1_12521.t1 | 1 | 1 | TruD | 11 | 212 | 1.2e-27 | 96.6 | 3.4e-30 | 2.5e-26 | 92.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_43433.1_12521.t1 | gi|348512867|ref|XP_003443964.1| | PREDICTED: pseudouridylate synthase 7 homolog isoform X1 [Oreochromis niloticus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_43433.1_12521.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_43433.1_12521.t1 cccagtataaaagagacttgattgactggccaaagaatcttgggaaatactgtcgatttgtgctgtacaaggaaaacttt gacactggtgactgtataggaagactgtcaaagtattttcacatcaataagaacatgtttcaacatgctggaaccaaaga caagcgagccataacctcccaagaagtgacagtctacagagtaagagcagaaaggctccagaaggcaaatagatactttt accgcatggcacttggtaatttcagaaatgtttgtggtgacatgactgaaatcaacaaggcaatgacttcattgaaagaa tctggattcatcaattattatggaatgcaaagatttggtacaacggccattcctacccatcaagttggcagagctatact taaaagtgattataaagaggctgcagaactgattctgaaaccaagacttggagagccagcaaatgtgtcagaaatccgca ccaagtggtgggaatccaagaactcgttagagatgattaccaagctacccagaaaatacaacatagaaagaaacttgctg gaaggtctcatcaagtatggggaaactaactatgccaatgcatttcaaaagatccaccgcaacacacgtaccatgtatc |
|
Protein
| Protein ID | pfu_aug1.0_43433.1_12521.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_43433.1_12521.t1 QYKRDLIDWPKNLGKYCRFVLYKENFDTGDCIGRLSKYFHINKNMFQHAGTKDKRAITSQEVTVYRVRAERLQKANRYFY RMALGNFRNVCGDMTEINKAMTSLKESGFINYYGMQRFGTTAIPTHQVGRAILKSDYKEAAELILKPRLGEPANVSEIRT KWWESKNSLEMITKLPRKYNIERNLLEGLIKYGETNYANAFQKIHRNTRTMY |
|