Gene
| Gene Model ID | pfu_aug1.0_4359.1_37852 |
|---|---|
| Locus | scaffold4359.1 : 47078 ... 54425 : - |
| To GenomeBrowser | scaffold4359.1:47078..54425 |
| Genes list of scaffold | scaffold4359.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4359.1_37852.t1 | 1 | 1 | COP-gamma_platf | 100 | 249 | 0.0 | 212.8 | 0.0 | 0.0 | 212.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4359.1_37852.t1 | gi|260810700|ref|XP_002600091.1| | hypothetical protein BRAFLDRAFT_265302 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| 8-16cell | 2 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4359.1_37852.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4359.1_37852.t1 atgctgagatgtttgcttgacactgacgatgaagtacgtgacagagccacgttctacgttaacattcttaaacagacaca gaaggctctgaactctacctacatcctcaatggattacaagtatctgtcgtaggattggagaggtctttacaccattata ctctggaaccatcggcagaaccgtttgacatgaagagtgtaccgctagaaacacaaccaatggttgaacagaaaacagtg cgagagcctggagagacagtgtcggccaaaccatcagagaaagtggcagcatcgagacaggatatatacgcagaacaact ggcagccattcccgagtttgctaacctgggatctctgttcaagtcctctagtctgccgatagaactgacagaatcagaga cggagtatgtcgtacagtgtgttaaacacactttcagtcgctatatggtattccagtttgactgtaccaacacccttaat gaccagatcttggagaatgtgacagtacagatggatggagcggagggatttgatgtgttgaagacgataccctgccccag tctgccgtacaataaaccagggactacgtacacactggtcagactacctgaagatcctcaactagtgacgggaactttca cttgcgttctgaagtttattgtgaaggactgtgaccctaacacaggagaacccgatgaggaaggttacgaagacgaatat gtgctggaggacctggaagtcacagttgccgatcatgtacagagagtcatgaaaccaaacttcagtgcatcatgggaaga ggtggggccagaaaacgaactggaggacacctacgcactgtctaccatgaagtctttagaaggtgaggaaaaagttgtca ttttaaatatttccttagaaagtttttttttgttgatgcaaaaactcgaaattttagaaggaaacaaaagatacatgtat gtatatgtaggccatacgnggaaggaggggttaccatgcagcttactgtacgatcaacagatcccaatgtttctgaagta ttag |
|
Protein
| Protein ID | pfu_aug1.0_4359.1_37852.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4359.1_37852.t1 MLRCLLDTDDEVRDRATFYVNILKQTQKALNSTYILNGLQVSVVGLERSLHHYTLEPSAEPFDMKSVPLETQPMVEQKTV REPGETVSAKPSEKVAASRQDIYAEQLAAIPEFANLGSLFKSSSLPIELTESETEYVVQCVKHTFSRYMVFQFDCTNTLN DQILENVTVQMDGAEGFDVLKTIPCPSLPYNKPGTTYTLVRLPEDPQLVTGTFTCVLKFIVKDCDPNTGEPDEEGYEDEY VLEDLEVTVADHVQRVMKPNFSASWEEVGPENELEDTYALSTMKSLEGEEKVVILNISLESFFLLMQKLEILEGNKRYMY VYVGHTXKEGLPCSLLYDQQIPMFLKY |
|