Gene
| Gene Model ID | pfu_aug1.0_43625.1_63151 |
|---|---|
| Locus | scaffold43625.1 : 1 ... 2215 : - |
| To GenomeBrowser | scaffold43625.1:1..2215 |
| Genes list of scaffold | scaffold43625.1 |
| Synonym | NA |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | bmp3-like |
| Description | NCBI BLASTP hit to gb|ACF93445.1| |
| mRNA evidence |
| Study field | other developmental genes |
|---|---|
| Gene name | bmp3B |
| Description | NCBI blastp hit to gb|ACF93445.1| [Branchiostoma japonicum] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_43625.1_63151.t1 | 1 | 1 | TGF_beta | 227 | 330 | 8.5e-35 | 119.2 | 1.3e-38 | 1.9e-34 | 118.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_43625.1_63151.t1 | gi|194718235|gb|ACF93445.1| | bone morphogenetic protein 3/3b [Branchiostoma japonicum] | 9.94922e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_43625.1_63151.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_43625.1_63151.t1 atgagggccgaaagttttggctggcagtggtatgacgtcaccaactcagtagtgagttgtctggcggcgaggcggaaaag acctcacttgtttgcgctggattttaaggcggagaaaacaaacggaaaatataaatctatcgcattaaagaagttcgtac gtcatcattccatgccatttttagttatttattcgaacgatactcaggaaaatcgctttgaccagttagattctttagcc gaaaaaatgttaagtgaaaattaccaacattctcaaagtgaaagtgaaaatggagagaaagaaattagctcaaatttgaa aaccaaaaagccaagacatgtaaatggggattcggaagaagttgttctccgagaaaaaagatccatttttgacaatgaga taccggaaaccccgatggactatgggcttttcgaaaggagatacaatattccgcaaactcatccgggcattttacaaggc aggcgtcaaaagaagcccgtcattgcaaatcatcagcttataccgtatcccaaaaaatcaaatcgatcgagaaaaaggaa aaatcgaaacaaaaacagacgacgaaaaaatcataggaagaacagaagaaagttaaagtttcctaaagaatgggaagatt atcatcgcaatctagccaatgaagaaaacgccggaagtgtgtgtgggcggcggaagttggttgtgaacttcgcagacata ggctggggtgactggattatttccccgaagtcgtttgatgctcattattgcacgggaacctgtcctttcccacttactaa gaggctgcgtccatcgaaccatgccacaattcagagtatggtacatgctatagggatatattccaaagtcccagcaccat gttgtgtgcccgacaatatgtcgtccctcactctcctttatttcgacgaaaatagaaacgttgtcctcaaaaattatccc agaatgactgtggattcatgtgcgtgtaggtaa |
|
Protein
| Protein ID | pfu_aug1.0_43625.1_63151.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_43625.1_63151.t1 MRAESFGWQWYDVTNSVVSCLAARRKRPHLFALDFKAEKTNGKYKSIALKKFVRHHSMPFLVIYSNDTQENRFDQLDSLA EKMLSENYQHSQSESENGEKEISSNLKTKKPRHVNGDSEEVVLREKRSIFDNEIPETPMDYGLFERRYNIPQTHPGILQG RRQKKPVIANHQLIPYPKKSNRSRKRKNRNKNRRRKNHRKNRRKLKFPKEWEDYHRNLANEENAGSVCGRRKLVVNFADI GWGDWIISPKSFDAHYCTGTCPFPLTKRLRPSNHATIQSMVHAIGIYSKVPAPCCVPDNMSSLTLLYFDENRNVVLKNYP RMTVDSCACR |
|