Gene
Gene Model ID | pfu_aug1.0_43625.1_63151 |
---|---|
Locus | scaffold43625.1 : 1 ... 2215 : - |
To GenomeBrowser | scaffold43625.1:1..2215 |
Genes list of scaffold | scaffold43625.1 |
Synonym | NA |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | bmp3-like |
Description | NCBI BLASTP hit to gb|ACF93445.1| |
mRNA evidence |
Study field | other developmental genes |
---|---|
Gene name | bmp3B |
Description | NCBI blastp hit to gb|ACF93445.1| [Branchiostoma japonicum] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_43625.1_63151.t1 | 1 | 1 | TGF_beta | 227 | 330 | 8.5e-35 | 119.2 | 1.3e-38 | 1.9e-34 | 118.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_43625.1_63151.t1 | gi|194718235|gb|ACF93445.1| | bone morphogenetic protein 3/3b [Branchiostoma japonicum] | 9.94922e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_43625.1_63151.t1 |
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Definition | - |
>pfu_aug1.0_43625.1_63151.t1 atgagggccgaaagttttggctggcagtggtatgacgtcaccaactcagtagtgagttgtctggcggcgaggcggaaaag acctcacttgtttgcgctggattttaaggcggagaaaacaaacggaaaatataaatctatcgcattaaagaagttcgtac gtcatcattccatgccatttttagttatttattcgaacgatactcaggaaaatcgctttgaccagttagattctttagcc gaaaaaatgttaagtgaaaattaccaacattctcaaagtgaaagtgaaaatggagagaaagaaattagctcaaatttgaa aaccaaaaagccaagacatgtaaatggggattcggaagaagttgttctccgagaaaaaagatccatttttgacaatgaga taccggaaaccccgatggactatgggcttttcgaaaggagatacaatattccgcaaactcatccgggcattttacaaggc aggcgtcaaaagaagcccgtcattgcaaatcatcagcttataccgtatcccaaaaaatcaaatcgatcgagaaaaaggaa aaatcgaaacaaaaacagacgacgaaaaaatcataggaagaacagaagaaagttaaagtttcctaaagaatgggaagatt atcatcgcaatctagccaatgaagaaaacgccggaagtgtgtgtgggcggcggaagttggttgtgaacttcgcagacata ggctggggtgactggattatttccccgaagtcgtttgatgctcattattgcacgggaacctgtcctttcccacttactaa gaggctgcgtccatcgaaccatgccacaattcagagtatggtacatgctatagggatatattccaaagtcccagcaccat gttgtgtgcccgacaatatgtcgtccctcactctcctttatttcgacgaaaatagaaacgttgtcctcaaaaattatccc agaatgactgtggattcatgtgcgtgtaggtaa |
Protein
Protein ID | pfu_aug1.0_43625.1_63151.t1 |
---|---|
Definition | - |
>pfu_aug1.0_43625.1_63151.t1 MRAESFGWQWYDVTNSVVSCLAARRKRPHLFALDFKAEKTNGKYKSIALKKFVRHHSMPFLVIYSNDTQENRFDQLDSLA EKMLSENYQHSQSESENGEKEISSNLKTKKPRHVNGDSEEVVLREKRSIFDNEIPETPMDYGLFERRYNIPQTHPGILQG RRQKKPVIANHQLIPYPKKSNRSRKRKNRNKNRRRKNHRKNRRKLKFPKEWEDYHRNLANEENAGSVCGRRKLVVNFADI GWGDWIISPKSFDAHYCTGTCPFPLTKRLRPSNHATIQSMVHAIGIYSKVPAPCCVPDNMSSLTLLYFDENRNVVLKNYP RMTVDSCACR |