Gene
| Gene Model ID | pfu_aug1.0_438.1_07543 |
|---|---|
| Locus | scaffold438.1 : 78986 ... 86951 : + |
| To GenomeBrowser | scaffold438.1:78986..86951 |
| Genes list of scaffold | scaffold438.1 |
| Synonym | pfu_aug2.0_371.1_04070 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | catenin beta-1 |
| Description | BLASTP best hit to NCBI Accession NP031640 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_438.1_07543.t1 | 7 | 1 | Cadherin | 56 | 149 | 0.0 | 435.5 | 4.8e-22 | 2.4e-18 | 66.1 |
| pfu_aug1.0_438.1_07543.t1 | 5 | 1 | Cadherin_2 | 60 | 121 | 2.9e-07 | 29.9 | 0.00027 | 1.3 | 8.6 |
| pfu_aug1.0_438.1_07543.t1 | 7 | 2 | Cadherin | 168 | 255 | 0.0 | 435.5 | 4.5e-25 | 2.2e-21 | 75.8 |
| pfu_aug1.0_438.1_07543.t1 | 5 | 2 | Cadherin_2 | 195 | 230 | 2.9e-07 | 29.9 | 0.0014 | 6.9 | 6.3 |
| pfu_aug1.0_438.1_07543.t1 | 7 | 3 | Cadherin | 272 | 365 | 0.0 | 435.5 | 2.5e-24 | 1.2e-20 | 73.4 |
| pfu_aug1.0_438.1_07543.t1 | 5 | 3 | Cadherin_2 | 311 | 336 | 2.9e-07 | 29.9 | 0.011 | 52.0 | 3.4 |
| pfu_aug1.0_438.1_07543.t1 | 7 | 4 | Cadherin | 382 | 467 | 0.0 | 435.5 | 4.1e-22 | 2.0e-18 | 66.4 |
| pfu_aug1.0_438.1_07543.t1 | 5 | 4 | Cadherin_2 | 426 | 439 | 2.9e-07 | 29.9 | 0.67 | 3300.0 | -2.3 |
| pfu_aug1.0_438.1_07543.t1 | 7 | 5 | Cadherin | 482 | 573 | 0.0 | 435.5 | 2.7e-24 | 1.3e-20 | 73.3 |
| pfu_aug1.0_438.1_07543.t1 | 7 | 6 | Cadherin | 587 | 675 | 0.0 | 435.5 | 1.7e-22 | 8.2e-19 | 67.6 |
| pfu_aug1.0_438.1_07543.t1 | 5 | 5 | Cadherin_2 | 625 | 646 | 2.9e-07 | 29.9 | 0.0076 | 38.0 | 3.9 |
| pfu_aug1.0_438.1_07543.t1 | 7 | 7 | Cadherin | 694 | 735 | 0.0 | 435.5 | 6.8e-10 | 3.4e-06 | 27.2 |
Transcript
| Transcript ID | pfu_aug1.0_438.1_07543.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_438.1_07543.t1 atgatagaaatcggacgcggtaccttcgattggcagagtttgaaatctattcctagcgcgggtggtaaagggaacagctc tgtcaaccttttgaagtgccgcagccatattagtgattggaatcgatcgacttctaatacagcaccttcattttcgcaaa ctacctattatgcagatgttgaagaagaagagaatccgggaaaacatgttataacaattactgcaactgactctgacact ggtgacgcaggacgcttaacatactctatgacagcagttagggatcagagaagtcaagatatgtttgccattaatccagt ttcgggtgcagtgaatacaactcgcagattggacagagaaattatggataagcatttcttttctgtgttggcagttgata atgcgcgggagccgaggacagcgcaggcaatgctggagataacagtccgtgacatcaacgataaagcacctgtatttgaa agcaatgtgtcttaccaagacatctctgagagtattgctgtaggatcacctgttcttactgtaaaagccacagatgacga tgcagggccaaatgctgaagtacgctactttctcattaactctggacctccaaatgatgtattcctgattgatcctacgg aaggaacgatcaccaccagaagtagtttggacagagaaaacattgcatcatacaagctactgataagagcaactgaccaa ggtccaagctcctcaagaaagtctgccactgccactgtgaatgttagacttatagacgaaaatgataattacccacaatt tacacaaaggacataccatgtgaacgtctccgaagattacaactacagccaaaatcctataattatcacagttaacgcca ctgaccttgatgatggaattaacaaggacatatactacgccatatttgggggtaatactcaagaaacttttgccgtcaat agattaacaggtgctatctcaatacaaagatctctggattatgaagaaacgcaacagtttcagttgtcagttagggcaca agatggaggacaaccacctttaacaaacagtacaacagtggtcgttgacattcttgatgtaaatgataatgatcctcagt tttattcctctccacatataggcacagtattggagagtgcaagcatcaattccacagtgcttaatgttcaagcgcgcgat gcagatagcgggaggaatcaggaactggtatacagtatcattgatgcgcctgcaaatttacctttcttcattgtgaacgg ggaaataaaagtaaagtcagctttggacagagagcaaggtagtaattacgaatttgtagtgaaggctcaggatcggggaa ttccccctcgttctgcaacatcacgcgtgcagatcacggtccgtgacgttaatgacaacagtccagtgtttgatccaaaa ttctacaatgtcacagttgctgaggacttgcaagtgtctagtagaataataagtcttaccgcaacggatgctgatagtgg agacaactctttcataacatactctattagacgcggtaatgagaataatgtcttccgcatgaccaccgcaaatggagaag gactcatatctttgatcagggagctggactacaagactcagaatgtttacatattgacagttttggctgttgatcctggt aatttgaatgatacggcaacggtacagattaacgtattagacacaaatcaacataaacctgcatttcaaggtacacccta cacaacttatgttgatgaaaacattggaataggtacttcaatttataaggtgttagcgatagatcaggatgtgggagaaa atgctagagtcagctaccagattctaggtaatacagatttccaaatagatgcaaacactggagagatcaccactagaatt gaactggatcgagaaacaaaactgagctataattttgaggtcactgctcatgataatggacagccatctttaacagcaac agaaatggtcacaatttttgtccaggatgtcaatgacaattccccagagtttacctacccggactcccaggattcctttg tcggcagcattgcagaagatgctcgccctgcgcagagtgtcctcacggtagcagctactgatagagacaaaggtcccaat gccctcatacgctacaagtttctggagacaactgaccctcattttggtgattttgata |
|
Protein
| Protein ID | pfu_aug1.0_438.1_07543.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_438.1_07543.t1 MIEIGRGTFDWQSLKSIPSAGGKGNSSVNLLKCRSHISDWNRSTSNTAPSFSQTTYYADVEEEENPGKHVITITATDSDT GDAGRLTYSMTAVRDQRSQDMFAINPVSGAVNTTRRLDREIMDKHFFSVLAVDNAREPRTAQAMLEITVRDINDKAPVFE SNVSYQDISESIAVGSPVLTVKATDDDAGPNAEVRYFLINSGPPNDVFLIDPTEGTITTRSSLDRENIASYKLLIRATDQ GPSSSRKSATATVNVRLIDENDNYPQFTQRTYHVNVSEDYNYSQNPIIITVNATDLDDGINKDIYYAIFGGNTQETFAVN RLTGAISIQRSLDYEETQQFQLSVRAQDGGQPPLTNSTTVVVDILDVNDNDPQFYSSPHIGTVLESASINSTVLNVQARD ADSGRNQELVYSIIDAPANLPFFIVNGEIKVKSALDREQGSNYEFVVKAQDRGIPPRSATSRVQITVRDVNDNSPVFDPK FYNVTVAEDLQVSSRIISLTATDADSGDNSFITYSIRRGNENNVFRMTTANGEGLISLIRELDYKTQNVYILTVLAVDPG NLNDTATVQINVLDTNQHKPAFQGTPYTTYVDENIGIGTSIYKVLAIDQDVGENARVSYQILGNTDFQIDANTGEITTRI ELDRETKLSYNFEVTAHDNGQPSLTATEMVTIFVQDVNDNSPEFTYPDSQDSFVGSIAEDARPAQSVLTVAATDRDKGPN ALIRYKFLETTDPHFGDFD |
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