Gene
| Gene Model ID | pfu_aug1.0_4393.1_30680 |
|---|---|
| Locus | scaffold4393.1 : 1 ... 39215 : - |
| To GenomeBrowser | scaffold4393.1:1..39215 |
| Genes list of scaffold | scaffold4393.1 |
| Synonym | pfu_aug2.0_2127.1_25311 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | G protein-coupled receptor-like |
| Description | XP_001202947.1 PREDICTED: similar to G protein-coupled receptor [Strongylocentrotus purpuratus] >ref|XP_784914.2| PREDICTED: similar to G protein-coupled receptor [Strongylocentrotus purpuratus] 273 551 63% 7e-74 44%Ldl_recept_a 22 51 3.9e-17 61.7 6.9e-12 1.0e-08 34.7Ldl_recept_a 54 89 3.9e-17 61.7 4.9e-11 7.4e-08 32.07TM_GPCR_Srsx 118 350 0.00041 19.5 5.9e-07 0.0009 18.47TM_GPCR_Srx 124 318 5.9e-05 22.1 8.5e-08 0.00013 21.07tm_1 135 380 2.1e-27 95.7 2.0e-30 3.1e-27 95.2Kringle 461 535 4.6e-08 32.9 1.2e-10 1.8e-07 31.0F5_F8_type_C 520 580 0.0029 17.3 2.0e-05 0.03 14.0CUB 594 649 4.0e-20 71.8 6.5e-06 0.0099 15.8CUB 739 851 4.0e-20 71.8 6.1e-18 9.2e-15 54.5 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4393.1_30680.t1 | 2 | 1 | Ldl_recept_a | 22 | 51 | 4.2e-17 | 61.7 | 6.8e-12 | 1.1e-08 | 34.7 |
| pfu_aug1.0_4393.1_30680.t1 | 2 | 2 | Ldl_recept_a | 54 | 89 | 4.2e-17 | 61.7 | 4.9e-11 | 8.1e-08 | 32.0 |
| pfu_aug1.0_4393.1_30680.t1 | 1 | 1 | 7tm_1 | 135 | 380 | 2.3e-27 | 95.7 | 2.0e-30 | 3.3e-27 | 95.2 |
| pfu_aug1.0_4393.1_30680.t1 | 1 | 1 | Kringle | 461 | 535 | 5.0e-08 | 32.9 | 1.2e-10 | 2.0e-07 | 31.0 |
| pfu_aug1.0_4393.1_30680.t1 | 2 | 1 | CUB | 594 | 649 | 4.3e-20 | 71.8 | 6.5e-06 | 0.011 | 15.8 |
| pfu_aug1.0_4393.1_30680.t1 | 2 | 2 | CUB | 739 | 851 | 4.3e-20 | 71.8 | 6.1e-18 | 1.0e-14 | 54.5 |
Transcript
| Transcript ID | pfu_aug1.0_4393.1_30680.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4393.1_30680.t1 atgcgtgaccaattgaactatactgttcaacatgttcccataatagataattccagcctgtacttccactgcaagaatga acaactcatatcaaatatgtttgtttgtgacggagaaaatgactgcattgataactcagatgaagaacgttgtggtacag agtgtacttcaagtcagtttgaatgtaacagtggacagtgtatatctatatccatgtactgcgactttataccacaatgc ccagatagatctgatgaaacattctgtgaagaagacgaattttcctcatgcactgatctaatgcgcaatgatgtactacg gtggtttttatggttaattgggatctctgcactacttggaaacttcggagttattttatacagatttatatttgacaggc ctaccctcaagaaaggacatggtgtactaatagcaaatcttggcgtatcagatttcttcatgggagtatatcttataatt attgcatccgccgatattcactttagaggtcgatatatttggaatgatttaagttggcgacgaggggacatgtgcaagtt tgctggcatgatgtccacaattgcaagtgaatgctcggtcatcttcctctgcttaattacgattgacagaattattgctg ttcgatttccctttggtcaataccgcataacgcagaaaagagcactcgtagcatgtggaatcgcttgggctataatattc cttctcgcagtggttcctttactgccaagttcctatttcatgggtgagttttattcaagatccgcagtgtgtctagctct tccgttaacccgggacaaacctgcaggatgggaatatggaacagcgatattcatcatattcaatttccttattttcctca taattgcattcggacagatggtcatttacaaagaaatatctattgccattgatgctaaaatacgaacacaacgaaaaaac caagacgttgccatagctagaggactgtttctggtagttcttactgactttgtatgctggtttcctataggagttatggg tctaatggcactatctggatgggcgatccctggtgaagtttacgcatggactgcagttttcattttgcctataaactcag cattgaatccatttctgtatacattctccacaatcatcaaacaaagaatggatttctttaaggggcctacgaacgactct tgtcaacaagttgagggtatgctagtacagaagaacctcttttacatggttgacgtcaactctagctgggttttcacggg aaagtatccaaacatggacattgccacttacgctgaaagaatcggcattccattttgctattacattccatacgatcgcc gggagtgttactatgaagatgacgatggtatttcctacaatgggagggtcaatgtatcagaatccggaaaaccttgcaag aattgggcaaacgtatcgtctgatttcgtcaattctaaacattggtacggggaattcgaagaaaacttttgcaggaacta cggcgagtacgaacggacaacagcccacccagtgtgtgtcgtagatgatgacttgacaatggagaaatgcaccgtttcta tttgtgatttttacctggacgaagccatggctgccacatctgtacaacgttttatattcaccaatgaaataatggccaga tttgttcgtatttacccaatcacggatgagaatgaaaatgcatgtctgaagatggaagtaataggatgtcaaaagcaaga attaaaagaattaaattattgtggacagcaaattcaaataaagagtaacgaattagtcacaataacgtctcctggtgcac ctctaatgtatgagcaaggactaaactgttcatgggaagtcagagtagataatgataaatatgcaaaacttgaaatcata ttcgtacaacttggaaagacagcaactttagcagaaattaaagagcttggtgtctatgatgtaaacccggggttttgtaa ggatacacttaccatccaatcctcatccaacgaaaaaactgttctagatgattcaaatgaaaagcaatattctgatactg tcttcgtctcttcaacatcttcaatttccatcaacttactgacatgcttccagacttcacctcaaggacaaaactacttt gaaatcaaagcatcatctgaagaaatccccggatgtaatatagtggcgaaaggctgtcaagctacttgcactattcccac agcctatatttcctctgaccgtttcccctctgaataccaagacggggacaattgtatatggacaatagagggaacatttg gacaatttgtcgaccttgaaattctgaacatagacatacctaacgatggaagttcttgcgcgaaatccttcgtagctgtt tatgacacaaatttgaaaggagaagaacgcttgatagaccgattttgtaaggagaatagaccttacgagaaaattcgttc aagatggcaaagaatgagaattgagtttagagcaagttctggtttagttggaagaggttttcttggaaaatatgagataa aaaccttcactcagactaatgataatgtatcaaactcaggtaagcactgtgaaataggaacgttctacttcgaatatagc gaaaaacgtcgaatgttcgtttgctgtgaagataagttctccctccgcaatgatatttcacatgtaaagaaacgggatga aaaatgggcagaaataactcaagtaagacgtaaaatgtaa |
|
Protein
| Protein ID | pfu_aug1.0_4393.1_30680.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4393.1_30680.t1 MRDQLNYTVQHVPIIDNSSLYFHCKNEQLISNMFVCDGENDCIDNSDEERCGTECTSSQFECNSGQCISISMYCDFIPQC PDRSDETFCEEDEFSSCTDLMRNDVLRWFLWLIGISALLGNFGVILYRFIFDRPTLKKGHGVLIANLGVSDFFMGVYLII IASADIHFRGRYIWNDLSWRRGDMCKFAGMMSTIASECSVIFLCLITIDRIIAVRFPFGQYRITQKRALVACGIAWAIIF LLAVVPLLPSSYFMGEFYSRSAVCLALPLTRDKPAGWEYGTAIFIIFNFLIFLIIAFGQMVIYKEISIAIDAKIRTQRKN QDVAIARGLFLVVLTDFVCWFPIGVMGLMALSGWAIPGEVYAWTAVFILPINSALNPFLYTFSTIIKQRMDFFKGPTNDS CQQVEGMLVQKNLFYMVDVNSSWVFTGKYPNMDIATYAERIGIPFCYYIPYDRRECYYEDDDGISYNGRVNVSESGKPCK NWANVSSDFVNSKHWYGEFEENFCRNYGEYERTTAHPVCVVDDDLTMEKCTVSICDFYLDEAMAATSVQRFIFTNEIMAR FVRIYPITDENENACLKMEVIGCQKQELKELNYCGQQIQIKSNELVTITSPGAPLMYEQGLNCSWEVRVDNDKYAKLEII FVQLGKTATLAEIKELGVYDVNPGFCKDTLTIQSSSNEKTVLDDSNEKQYSDTVFVSSTSSISINLLTCFQTSPQGQNYF EIKASSEEIPGCNIVAKGCQATCTIPTAYISSDRFPSEYQDGDNCIWTIEGTFGQFVDLEILNIDIPNDGSSCAKSFVAV YDTNLKGEERLIDRFCKENRPYEKIRSRWQRMRIEFRASSGLVGRGFLGKYEIKTFTQTNDNVSNSGKHCEIGTFYFEYS EKRRMFVCCEDKFSLRNDISHVKKRDEKWAEITQVRRKM |
|