Gene
| Gene Model ID | pfu_aug1.0_4394.1_59513 |
|---|---|
| Locus | scaffold4394.1 : 1 ... 18548 : + |
| To GenomeBrowser | scaffold4394.1:1..18548 |
| Genes list of scaffold | scaffold4394.1 |
| Synonym | pfu_aug2.0_49.1_30066 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4394.1_59513.t1 | 3 | 1 | DUF4205 | 3 | 89 | 5.6e-21 | 74.6 | 1.1e-13 | 1.6e-09 | 36.9 |
| pfu_aug1.0_4394.1_59513.t1 | 3 | 2 | DUF4205 | 140 | 168 | 5.6e-21 | 74.6 | 8.5e-08 | 0.0013 | 17.5 |
| pfu_aug1.0_4394.1_59513.t1 | 3 | 3 | DUF4205 | 251 | 329 | 5.6e-21 | 74.6 | 1.5e-07 | 0.0022 | 16.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4394.1_59513.t1 | gi|260827734|ref|XP_002608819.1| | hypothetical protein BRAFLDRAFT_125611 [Branchiostoma floridae] | 1.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4394.1_59513.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4394.1_59513.t1 ggtttacctttagtgagtaccaggcgacagcactagtccagtatgaaggtggaccttgtgcagttattgcccctgtccag gcatactttctgcagaatttacttttcaatctggatattgaagacctttctacaattccagaggaacagtgcaatgaagc cctactacagtcacttggagatatactcatagacgttaattctaccggcaaattctttgtagtcagtcttcaagacacta taatatcagacgctaaaaatagtgaaaaatgcacaaactcatcaaaatttccttctttgataaaaaatgctgaaaatgaa gggaaaaaacgtcaagtcccagaagtaaggacgaagatcaggaaacggaagaagatacggaacatagagcgaaacgacag cgaccagaaaatgatgtcttccacagcagactcaaatctttacggcattccccacagatgtaagatcggcttcctaacgt taatggaacatttgaggtattgtgagaattttgcaaaaccgtacaggaagcaagaactcaaggtcctctaccaagtttgt gtttgttgtgccaattggtcaacaaatatggtcattgagggctctgattggctgacacattttcgaattctgaaaccgct gcacaggattgcagaaaaccttacaggaagcaagtactcaagggcttccaccaagtttgtgtttttcataccggagaaga atctggtatcgtgtgaaaatgaagcatcaaatgccaaagtcatattccagtcatttgatccagaaggacaggacaaaaca gaacagccgtcgacatttgaattattgcactggaacgggctctcgaggtcgtcaacagatggcaaggtgatgtactcaag agggaaagctactgtcccagaagaaatggaattacaaataattacagatttatctcccatgatcatgtgccttcggacaa aatggccaacgatggaactgcaatgggagaatgaacgaataccgtcactaaattga |
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Protein
| Protein ID | pfu_aug1.0_4394.1_59513.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4394.1_59513.t1 FTFSEYQATALVQYEGGPCAVIAPVQAYFLQNLLFNLDIEDLSTIPEEQCNEALLQSLGDILIDVNSTGKFFVVSLQDTI ISDAKNSEKCTNSSKFPSLIKNAENEGKKRQVPEVRTKIRKRKKIRNIERNDSDQKMMSSTADSNLYGIPHRCKIGFLTL MEHLRYCENFAKPYRKQELKVLYQVCVCCANWSTNMVIEGSDWLTHFRILKPLHRIAENLTGSKYSRASTKFVFFIPEKN LVSCENEASNAKVIFQSFDPEGQDKTEQPSTFELLHWNGLSRSSTDGKVMYSRGKATVPEEMELQIITDLSPMIMCLRTK WPTMELQWENERIPSLN |
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