Gene
| Gene Model ID | pfu_aug1.0_4397.1_16388 |
|---|---|
| Locus | scaffold4397.1 : 20378 ... 25945 : - |
| To GenomeBrowser | scaffold4397.1:20378..25945 |
| Genes list of scaffold | scaffold4397.1 |
| Synonym | pfu_aug2.0_107.1_23458 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4397.1_16388.t1 | 2 | 1 | FKBP_C | 37 | 130 | 5.5e-26 | 90.4 | 1.4e-29 | 2.1e-25 | 88.5 |
| pfu_aug1.0_4397.1_16388.t1 | 2 | 2 | FKBP_C | 276 | 295 | 5.5e-26 | 90.4 | 0.37 | 5500.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4397.1_16388.t1 | gi|224065421|ref|XP_002301809.1| | hypothetical protein POPTR_0002s24970g [Populus trichocarpa] | 3.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 3 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4397.1_16388.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4397.1_16388.t1 atgaattatacttttatttcatggactgtgtttctagtcatatttgttctttctgttgtggacagtaggatagaaatccg gacaatacgtcaaggcaatggtgtagatgtccctcaagacaacgatacagttgtggtccattatacaggatcattggtag acgggagagtgttcgattcctctcggtcacctgggcggacaccgtttgaattcatcattggacaagggacagtcatcaat ggttgggacatcggctttaagcatatgagtcttggacagcgagcacaactgatcataacctatgacgacgcttatggatc agcgggaatgatgtcatcaaacccacccatctacccgtttgccaccctaatatttgatgtggagttgctccagatcaagc gcccacagcaagtaccccagaacaacttccagtctggatttgcgactggtcagcaacaatctatgggattctctaaccaa caacaaggggcagcacagattgcaacacaaggaggtggcacccagtttgccgcccagggaatgacctttggtagccaagg ccagcagacggcacaatttggtcaagttcagccgggtggtcaggtcgccggtcagtttggtacagctccagatgctagtc aacaaatgttccaacagagcggtcagtcaagtcaacagctaggtgtacaacagtcacaaggtcagcgtcagtcacaaaca gctcagtttgggtcgtctgctacggcgggacaggctcagtttggctcgcctgctgctgcagcgggacagtcacaattcgg atcgtccggtgctggtggaggggcacagtttggcacatcgggagggcagagtcagtttggattacaacagggaatgaacc aagttagcatgcaggcctcaggtcaaacggcgcaacaaggatcacaagttggatctcaacaactcggagttcaacaggga tttggtgtacaacagacacaaacagggaactttcaacagggctag |
|
Protein
| Protein ID | pfu_aug1.0_4397.1_16388.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4397.1_16388.t1 MNYTFISWTVFLVIFVLSVVDSRIEIRTIRQGNGVDVPQDNDTVVVHYTGSLVDGRVFDSSRSPGRTPFEFIIGQGTVIN GWDIGFKHMSLGQRAQLIITYDDAYGSAGMMSSNPPIYPFATLIFDVELLQIKRPQQVPQNNFQSGFATGQQQSMGFSNQ QQGAAQIATQGGGTQFAAQGMTFGSQGQQTAQFGQVQPGGQVAGQFGTAPDASQQMFQQSGQSSQQLGVQQSQGQRQSQT AQFGSSATAGQAQFGSPAAAAGQSQFGSSGAGGGAQFGTSGGQSQFGLQQGMNQVSMQASGQTAQQGSQVGSQQLGVQQG FGVQQTQTGNFQQG |
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