Gene
| Gene Model ID | pfu_aug1.0_4408.1_44931 |
|---|---|
| Locus | scaffold4408.1 : 38611 ... 42475 : - |
| To GenomeBrowser | scaffold4408.1:38611..42475 |
| Genes list of scaffold | scaffold4408.1 |
| Synonym | NA |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to FR715631 (MgC1q52). 107 bits, 7e-22 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4408.1_44931.t1 | 1 | 1 | C1q | 53 | 177 | 2.0e-19 | 69.8 | 1.6e-23 | 2.4e-19 | 69.5 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 4 |
| mantleEdge | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4408.1_44931.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4408.1_44931.t1 atgaccatgctccagacagtcgtattctttctactccctgtttttggaagcctttgtggagataatggcaatcaacgtat catcgagttacagagccaactgaggcttataagtgacagccttggttcattgatgtcacaatgtgggaacgtaattgcct tccatgccacactgagtaatgaagttgcaaacctcccggagaagtctcctctcgtatttgataccgtaaaaatcaacatg ggaggagggtataattctacaagcggcatctttatagcacctgttgggggtgtgtatgtctgtgactggacaatactgac caaggccaatgtgtactttcactcagagcttgtggtgaacgggctgcggatggcagcaaataatcttcatgcttcaaacc tcaaacatcgtcaggccaccacgatgaccattgttaaactagatgcaggagatctagtttggattcaaccataccaggga tataaggggacgtatgcgtacggttcagaatggagtaaattttcttgtttcaaactgtaa |
|
Protein
| Protein ID | pfu_aug1.0_4408.1_44931.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4408.1_44931.t1 MTMLQTVVFFLLPVFGSLCGDNGNQRIIELQSQLRLISDSLGSLMSQCGNVIAFHATLSNEVANLPEKSPLVFDTVKINM GGGYNSTSGIFIAPVGGVYVCDWTILTKANVYFHSELVVNGLRMAANNLHASNLKHRQATTMTIVKLDAGDLVWIQPYQG YKGTYAYGSEWSKFSCFKL |
|