Gene
| Gene Model ID | pfu_aug1.0_4424.1_30692 |
|---|---|
| Locus | scaffold4424.1 : 29338 ... 33695 : - |
| To GenomeBrowser | scaffold4424.1:29338..33695 |
| Genes list of scaffold | scaffold4424.1 |
| Synonym | pfu_aug2.0_44.1_13480 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4424.1_30692.t1 | 1 | 1 | Beta-TrCP_D | 29 | 68 | 2.8e-24 | 84.4 | 1.7e-27 | 5.1e-24 | 83.5 |
| pfu_aug1.0_4424.1_30692.t1 | 1 | 1 | F-box | 74 | 120 | 1.7e-07 | 30.6 | 1.5e-10 | 4.4e-07 | 29.3 |
| pfu_aug1.0_4424.1_30692.t1 | 2 | 1 | F-box-like | 83 | 119 | 6.6e-10 | 38.5 | 6.5e-13 | 1.9e-09 | 37.0 |
| pfu_aug1.0_4424.1_30692.t1 | 2 | 2 | F-box-like | 123 | 131 | 6.6e-10 | 38.5 | 0.72 | 2200.0 | -1.5 |
| pfu_aug1.0_4424.1_30692.t1 | 3 | 1 | WD40 | 194 | 219 | 3.4e-25 | 86.9 | 3.5e-07 | 0.001 | 18.8 |
| pfu_aug1.0_4424.1_30692.t1 | 3 | 2 | WD40 | 230 | 265 | 3.4e-25 | 86.9 | 7.1e-15 | 2.1e-11 | 43.2 |
| pfu_aug1.0_4424.1_30692.t1 | 3 | 3 | WD40 | 270 | 299 | 3.4e-25 | 86.9 | 3.4e-08 | 0.0001 | 22.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4424.1_30692.t1 | gi|207080208|ref|NP_001128840.1| | DKFZP468D129 protein [Pongo abelii] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_4424.1_30692.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4424.1_30692.t1 atgacgacttcagaacaaataagggactaccaggtagacaaacctcaaccttcagaacagtatttaaaggatagggacac ttgtaccaagtattttgaaaactggacagagtatgaccaaatccagtttgtgcaggatttactctcacgaatgtgtcatt atcaacatggtcaaataaattcatttttaaagccaatgcttcagagagatttcatttcagcattacctgctaagggctta gaccatgtggcagaaagtatcctttcatttttggatgccaaatccctatgtgcagcagaattggtttgtaaagaatggta ccgagtgatctccgaaggaatgttatggaaaaagttaatagagagaatggtccgaacagatagtttgtggagaggcttgg ctgaacgcagggggtggggtatttatctcttcaaacccaaacacggagaaattccaaaggaccacaaattttataggaat ctttatccacaaataatccaagatatagatagaattgagaataactggagaactggtcgacacacactacagaggattca gtgtcgtagcgagaccagtaaaggggtgtactgtttacagtatgatgagactcgaatcatcagcggactgagggataaca ccatcaaagtctggaaatcaaaaacgatgtgggacagaactacactagagtgtacacaagtactgactggtcacacagga tctgtgctgtgcctacagtatgatgacaatattataatatcaggctctagtgattccactgtaagactatgggatattga atgtggggcatgtttacgagtattggagggacatgaagaactagttcgctgtattaggtttgacaataagcgcattgtta gtggtgcctacgatgggtaa |
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Protein
| Protein ID | pfu_aug1.0_4424.1_30692.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4424.1_30692.t1 MTTSEQIRDYQVDKPQPSEQYLKDRDTCTKYFENWTEYDQIQFVQDLLSRMCHYQHGQINSFLKPMLQRDFISALPAKGL DHVAESILSFLDAKSLCAAELVCKEWYRVISEGMLWKKLIERMVRTDSLWRGLAERRGWGIYLFKPKHGEIPKDHKFYRN LYPQIIQDIDRIENNWRTGRHTLQRIQCRSETSKGVYCLQYDETRIISGLRDNTIKVWKSKTMWDRTTLECTQVLTGHTG SVLCLQYDDNIIISGSSDSTVRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG |
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