Gene
| Gene Model ID | pfu_aug1.0_444.1_50867 |
|---|---|
| Locus | scaffold444.1 : 20108 ... 30915 : - |
| To GenomeBrowser | scaffold444.1:20108..30915 |
| Genes list of scaffold | scaffold444.1 |
| Synonym | pfu_aug2.0_81.1_03572 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_444.1_50867.t1 | 2 | 1 | DUF2369 | 106 | 151 | 1.3999e-42 | 145.8 | 0.00014 | 0.7 | 8.9 |
| pfu_aug1.0_444.1_50867.t1 | 4 | 1 | fn3 | 112 | 151 | 5.5e-07 | 29.6 | 0.011 | 56.0 | 3.9 |
| pfu_aug1.0_444.1_50867.t1 | 4 | 2 | fn3 | 203 | 239 | 5.5e-07 | 29.6 | 3.0e-05 | 0.15 | 12.2 |
| pfu_aug1.0_444.1_50867.t1 | 2 | 2 | DUF2369 | 211 | 485 | 1.3999e-42 | 145.8 | 2.10195e-43 | 1.1e-39 | 136.4 |
| pfu_aug1.0_444.1_50867.t1 | 4 | 3 | fn3 | 306 | 343 | 5.5e-07 | 29.6 | 0.32 | 1600.0 | -0.8 |
| pfu_aug1.0_444.1_50867.t1 | 4 | 4 | fn3 | 375 | 466 | 5.5e-07 | 29.6 | 0.0016 | 7.8 | 6.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_444.1_50867.t1 | gi|254692896|ref|NP_765987.2| | protein NDNF precursor [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_444.1_50867.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_444.1_50867.t1 atggcgaccagagtcctattcattccacaaggaaacaacacgcctatctatatcgtcataacgccatgtgcatccgctgt agagtggaccgtttctcataaaagtatcgtaccaaccaatgaaaacgaagattcctcgaattcactgggattcaacacgg ttataccaaaaacaaagactttatacagctacgcaggaagagatcaacataaatttgagctagaatcaggggaaatggga ttttatactgtggatattaaatctacagaaagtgattcgtatgttaaattttatggaacaacattccgaccaggaattta cccaaaattgccaccagatagtacagttaagacaaaaaaggtgaagaggaaaagtattacattcgaatggactgccagtc cggaaatgacgccatttgacaatcttatagaatatgcagttgctgtgaataggaaaaggccataccaaacacattgttcg gttatggcccatcttaatggtgacaaaaagcctcgtcctcccaaaaatgcggggttcatgttcccaagtgagaccgaaag ggataaaattcttcgggaaaatgcagcgcccatttccccggtaagaaaaggagaaatattttaccggcatgttgggagaa aaactcgtttaacatttaacagtgccagaccaggtcgtaaatacattataaatgtgtatgcaattaatattaaaacaaat agaactagtgcgtatcaaagtatagaagtgaggactagaaaagttaagaaagcaaagaaaacgaagcgactaaaagatgg tcgcatggaaattttctcgctagataagccaaagaaaactgtaacataccactacaagacaaaaaagccaaaacagaata tgcttcttgccattcatgtctgtagtggaaaagtgaatataaaagtcagtagcaagggcaaaaaacaaatatttagaaag agagtaaagggttacaaaacctttatattgaaggatttacccaaagacaagtatttcatagccgtcacaaactctcgaaa aggaaaagggagtgtgcgtcttttcgtaagcaaaagaccagaaaaattccagtatccgaaattaccaaaagagactaagc ttaaagctttgaacacaacatgcaataatgtgactatagcctgggagggtgaaacagacaggcagacattctgtatatat aagactgagttatcagcatccgtccgtaaaaagcgaaggaggagtcgatatgagcagtgcgtagaagaaactgacaaaaa tagtgaattagtagaatgtgtgaatttcagacatcataaatcgaaacctttattgcaaaaagtcatatctggtttaaagc caaattctgtgtataagatagatattcacgtgaagcgacgagggaagcaacaaaaacttacgtcactgaagtatgaaagt cttcaagtgcggacgttagatgacggttgttga |
|
Protein
| Protein ID | pfu_aug1.0_444.1_50867.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_444.1_50867.t1 MATRVLFIPQGNNTPIYIVITPCASAVEWTVSHKSIVPTNENEDSSNSLGFNTVIPKTKTLYSYAGRDQHKFELESGEMG FYTVDIKSTESDSYVKFYGTTFRPGIYPKLPPDSTVKTKKVKRKSITFEWTASPEMTPFDNLIEYAVAVNRKRPYQTHCS VMAHLNGDKKPRPPKNAGFMFPSETERDKILRENAAPISPVRKGEIFYRHVGRKTRLTFNSARPGRKYIINVYAINIKTN RTSAYQSIEVRTRKVKKAKKTKRLKDGRMEIFSLDKPKKTVTYHYKTKKPKQNMLLAIHVCSGKVNIKVSSKGKKQIFRK RVKGYKTFILKDLPKDKYFIAVTNSRKGKGSVRLFVSKRPEKFQYPKLPKETKLKALNTTCNNVTIAWEGETDRQTFCIY KTELSASVRKKRRRSRYEQCVEETDKNSELVECVNFRHHKSKPLLQKVISGLKPNSVYKIDIHVKRRGKQQKLTSLKYES LQVRTLDDGC |
|